Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_105710.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_105710.2 0 7.84 8.99 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_105710.2 SmLINC00372-IBu 0.85 4.25e-05 7.00e-04
Smp_105710.2 SmLINC01316-IBu 0.86 3.88e-05 7.00e-04
Smp_105710.2 SmLINC06646-IBu 0.89 5.26e-06 1.00e-04
Smp_105710.2 SmLINC06836-IBu 0.81 2.00e-04 2.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_105710.2 0 7.84 8.99 0.00 0.00
Smp_141630.4 0 12.63 13.76 12.50 12.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_105710.2 Smp_017650.1 0.93 2.31e-07 1.92e-05
Smp_105710.2 Smp_021340.3 0.94 1.49e-07 1.42e-05
Smp_105710.2 Smp_059340.3 0.92 9.14e-07 5.01e-05
Smp_059530.1 Smp_105710.2 0.93 2.15e-07 1.83e-05
Smp_105710.2 Smp_062070.1 0.91 2.46e-06 1.00e-04
Smp_105710.2 Smp_083380.2 0.94 1.32e-07 1.31e-05
Smp_105710.2 Smp_084940.2 0.94 8.11e-08 9.38e-06
Smp_105710.2 Smp_098370.1 0.92 5.74e-07 3.62e-05
Smp_103540.1 Smp_105710.2 0.93 3.39e-07 2.51e-05
Smp_105710.2 Smp_141630.4 0.93 4.34e-07 2.98e-05