Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_103930.6 Data

Correlation between Smp_103930.6 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_103930.6 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_103930.6 0 -6.83 2.00 5.05 3.32

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_103930.6 SmLINC00477-IBu 0.89 8.30e-06 2.00e-04
Smp_103930.6 SmLINC00484-IBu 0.95 1.53e-08 2.84e-06
Smp_103930.6 SmLINC00633-IBu 0.80 3.00e-04 3.20e-03
Smp_103930.6 SmLINC01122-IBu 0.83 9.37e-05 1.30e-03
Smp_103930.6 SmLINC01139-IBu 0.81 1.00e-04 2.20e-03
Smp_103930.6 SmLINC01433-IBu 0.85 5.06e-05 8.00e-04
Smp_103930.6 SmLINC01435-IBu 0.87 2.20e-05 4.00e-04
Smp_103930.6 SmLINC01538-IBu 0.81 1.00e-04 2.20e-03
Smp_103930.6 SmLINC01569-IBu 0.85 5.77e-05 9.00e-04
Smp_103930.6 SmLINC01746-IBu 0.80 3.00e-04 3.20e-03
Smp_103930.6 SmLINC01822-IBu 0.85 4.08e-05 7.00e-04
Smp_103930.6 SmLINC03309-IBu 0.83 1.00e-04 1.60e-03
Smp_103930.6 SmLINC03542-IBu 0.93 4.01e-07 2.69e-05
Smp_103930.6 SmLINC03693-IBu 0.84 6.68e-05 1.00e-03
Smp_103930.6 SmLINC04054-IBu 0.85 4.62e-05 8.00e-04
Smp_103930.6 SmLINC04345-IBu 0.87 2.11e-05 4.00e-04
Smp_103930.6 SmLINC04478-IBu 0.81 2.00e-04 2.70e-03
Smp_103930.6 SmLINC04521-IBu 0.88 9.55e-06 2.00e-04
Smp_103930.6 SmLINC04663-IBu 0.88 1.26e-05 3.00e-04
Smp_103930.6 SmLINC04747-IBu 0.84 8.10e-05 1.20e-03
Smp_103930.6 SmLINC04759-IBu 0.92 6.44e-07 3.76e-05
Smp_103930.6 SmLINC04769-IBu 0.89 7.50e-06 2.00e-04
Smp_103930.6 SmLINC05171-IBu 0.83 1.00e-04 1.60e-03
Smp_103930.6 SmLINC06221-IBu 0.86 3.08e-05 6.00e-04
Smp_103930.6 SmLINC06444-IBu 0.82 1.00e-04 1.70e-03
Smp_103930.6 SmLINC06449-IBu 0.84 8.43e-05 1.20e-03
Smp_103930.6 SmLINC06537-IBu 0.85 5.66e-05 9.00e-04
Smp_103930.6 SmLINC06538-IBu 0.86 3.01e-05 5.00e-04
Smp_103930.6 SmLINC06543-IBu 0.85 3.93e-05 7.00e-04

Correlation between Smp_103930.6 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_103930.6 0 -6.83 2.00 5.05 3.32
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_197400.1 0 0.00 0.00 10.12 7.45

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 Smp_103930.6 0.97 1.39e-09 6.29e-07
Smp_014780.1 Smp_103930.6 0.91 1.82e-06 8.15e-05
Smp_058140.3 Smp_103930.6 0.95 1.50e-08 3.00e-06
Smp_081920.1 Smp_103930.6 0.96 2.78e-09 9.85e-07
Smp_103930.6 Smp_082580.1 0.92 1.18e-06 6.01e-05
Smp_105730.1 Smp_103930.6 0.92 9.45e-07 5.12e-05
Smp_118560.1 Smp_103930.6 0.91 1.65e-06 7.61e-05
Smp_131840.1 Smp_103930.6 0.94 8.15e-08 9.41e-06
Smp_154180.1 Smp_103930.6 0.94 6.52e-08 8.09e-06
Smp_172520.1 Smp_103930.6 0.97 1.89e-09 7.68e-07
Smp_194960.1 Smp_103930.6 0.91 2.30e-06 9.61e-05
Smp_103930.6 Smp_194970.1 0.92 8.79e-07 4.87e-05
Smp_194980.1 Smp_103930.6 0.93 3.81e-07 2.72e-05
Smp_197400.1 Smp_103930.6 0.90 2.61e-06 1.00e-04