Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_102670.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_102670.1 SmLINC02039-IBu 0.83 9.66e-05 1.30e-03
Smp_102670.1 SmLINC02678-IBu 0.90 4.13e-06 1.00e-04
Smp_102670.1 SmLINC02888-IBu 0.88 1.02e-05 2.00e-04
Smp_102670.1 SmLINC04957-IBu 0.83 9.92e-05 1.40e-03
Smp_102670.1 SmLINC05989-IBu 0.81 2.00e-04 2.30e-03
Smp_102670.1 SmLINC06128-IBu 0.94 1.07e-07 1.08e-05
Smp_102670.1 SmLINC06892-IBu 0.80 2.00e-04 3.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC05095-IBu 0 -2.89 -9.14 -9.14 -9.14
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
Smp_002930.1 0 -1.91 -4.36 -9.53 -9.53
Smp_003770.1 0 -2.73 -3.76 -4.30 -3.65
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_019750.2 0 -2.70 -5.17 -4.10 -4.19
Smp_021730.1 0 -2.52 -3.78 -4.00 -3.90
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_033400.1 0 -2.69 -7.71 -5.07 -4.27
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_034550.1 0 -2.91 -5.29 -2.60 -4.93
Smp_035270.2 0 -2.51 -3.90 -3.56 -3.15
Smp_036250.1 0 -3.24 -3.82 -4.15 -3.72
Smp_038100.1 0 -2.11 -3.55 -4.08 -3.42
Smp_038530.1 0 -2.20 -4.62 -4.98 -6.68
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_054470.1 0 -3.95 -5.79 -2.45 -3.05
Smp_057060.1 0 -3.71 -5.93 -6.06 -6.08
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_063090.1 0 -2.16 -4.16 -3.57 -3.93
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_074560.1 0 -3.36 -3.15 -2.58 -5.11
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_079920.1 0 -2.43 -3.90 -3.20 -3.57
Smp_083720.1 0 -2.37 -5.50 -6.31 -5.77
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_097490.1 0 -3.10 -5.15 -2.72 -1.99
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_099420.1 0 -2.79 -4.14 -4.04 -2.98
Smp_099670.1 0 -3.51 -4.19 -5.26 -6.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_113710.1 0 -3.35 -5.78 -3.90 -2.82
Smp_114910.1 0 -3.08 -7.52 -7.91 -7.70
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_125440.1 0 -4.16 -3.48 -3.28 -4.46
Smp_129190.1 0 -4.25 -6.94 -3.48 -4.65
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_135250.1 0 -4.50 -7.60 -5.52 -7.87
Smp_145340.1 0 -2.62 -9.51 -6.28 -7.06
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_152260.1 0 -3.17 -4.39 -4.03 -4.71
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15
Smp_154370.1 0 -2.82 -7.17 -3.52 -2.90
Smp_155890.1 0 -3.01 -4.45 -2.70 -3.71
Smp_157310.1 0 -3.02 -6.78 -4.07 -5.91
Smp_159190.1 0 -3.70 -3.60 -3.46 -3.88
Smp_166950.1 0 -1.86 -2.33 -5.56 -4.94
Smp_168380.1 0 -1.89 -2.82 -9.66 -9.66
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_179460.1 0 -2.52 -7.07 -4.09 -3.97
Smp_179640.1 0 -2.62 -9.51 -6.28 -7.06
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_183420.1 0 -2.62 -9.51 -6.28 -7.06
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_194770.1 0 -2.35 -7.85 -7.77 -7.92
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_197110.1 0 -1.94 -2.50 -4.24 -4.44
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_204770.1 0 -2.64 -6.46 -5.44 -5.13
Smp_205190.1 0 -5.03 -3.88 -4.78 -3.78
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_206130.1 0 -1.65 -4.00 -5.51 -5.79
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47
Smp_214150.1 0 -3.99 -7.32 -3.18 -5.90

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_102670.1 SmLINC02678-IBu 0.90 4.13e-06 1.00e-04
Smp_102670.1 SmLINC05095-IBu 0.96 1.19e-08 2.56e-06
Smp_102670.1 SmLINC06128-IBu 0.94 1.07e-07 1.14e-05
Smp_102670.1 Smp_002930.1 0.92 5.60e-07 3.55e-05
Smp_003770.1 Smp_102670.1 0.96 4.35e-09 1.32e-06
Smp_102670.1 Smp_005860.1 0.94 1.33e-07 1.32e-05
Smp_102670.1 Smp_005860.3 0.91 2.36e-06 9.78e-05
Smp_102670.1 Smp_006560.1 0.99 8.40e-13 5.94e-09
Smp_014400.5 Smp_102670.1 0.94 1.24e-07 1.25e-05
Smp_102670.1 Smp_018880.1 0.98 5.54e-11 8.03e-08
Smp_102670.1 Smp_019750.2 0.98 3.01e-11 5.50e-08
Smp_102670.1 Smp_021730.1 0.95 4.49e-08 6.28e-06
Smp_102670.1 Smp_022430.1 0.99 7.48e-13 5.54e-09
Smp_102670.1 Smp_028990.2 0.91 1.39e-06 6.74e-05
Smp_030500.1 Smp_102670.1 0.95 3.76e-08 5.57e-06
Smp_033400.1 Smp_102670.1 0.94 1.78e-07 1.61e-05
Smp_102670.1 Smp_033610.1 0.96 4.89e-09 1.42e-06
Smp_102670.1 Smp_034550.1 0.93 3.25e-07 2.44e-05
Smp_035270.2 Smp_102670.1 0.93 2.60e-07 2.08e-05
Smp_036250.1 Smp_102670.1 0.93 3.02e-07 2.31e-05
Smp_102670.1 Smp_038100.1 0.91 1.46e-06 6.99e-05
Smp_102670.1 Smp_038530.1 0.91 1.26e-06 6.29e-05
Smp_102670.1 Smp_038560.6 0.92 6.96e-07 4.13e-05
Smp_042160.1 Smp_102670.1 0.98 5.77e-11 8.24e-08
Smp_102670.1 Smp_052060.1 0.95 2.51e-08 4.24e-06
Smp_054470.1 Smp_102670.1 0.91 1.44e-06 6.92e-05
Smp_102670.1 Smp_057060.1 0.98 5.21e-12 1.84e-08
Smp_102670.1 Smp_057790.1 0.97 5.04e-10 3.28e-07
Smp_102670.1 Smp_061870.1 0.99 6.77e-13 5.21e-09
Smp_102670.1 Smp_061940.1 0.96 4.05e-09 1.26e-06
Smp_063090.1 Smp_102670.1 0.93 5.03e-07 3.30e-05
Smp_102670.1 Smp_065580.1 0.91 2.19e-06 9.29e-05
Smp_102670.1 Smp_071380.2 0.92 9.73e-07 5.23e-05
Smp_102670.1 Smp_074560.1 0.91 1.61e-06 7.46e-05
Smp_102670.1 Smp_074570.1 0.93 2.71e-07 2.15e-05
Smp_102670.1 Smp_079220.1 0.94 1.35e-07 1.33e-05
Smp_102670.1 Smp_079920.1 0.90 2.74e-06 1.00e-04
Smp_102670.1 Smp_083720.1 0.93 2.90e-07 2.25e-05
Smp_102670.1 Smp_085290.3 0.91 1.41e-06 6.80e-05
Smp_092320.1 Smp_102670.1 0.90 2.70e-06 1.00e-04
Smp_097490.1 Smp_102670.1 0.93 2.70e-07 2.14e-05
Smp_097750.1 Smp_102670.1 0.91 1.95e-06 8.56e-05
Smp_099420.1 Smp_102670.1 0.98 1.06e-11 2.86e-08
Smp_102670.1 Smp_099670.1 0.94 9.01e-08 1.00e-05
Smp_102670.1 Smp_105610.1 0.94 8.14e-08 9.40e-06
Smp_106390.1 Smp_102670.1 0.93 3.21e-07 2.42e-05
Smp_102670.1 Smp_108050.1 0.93 2.45e-07 2.00e-05
Smp_110400.3 Smp_102670.1 0.92 1.12e-06 5.78e-05
Smp_102670.1 Smp_113710.1 0.90 4.61e-06 1.00e-04
Smp_102670.1 Smp_114910.1 0.92 6.86e-07 4.09e-05
Smp_102670.1 Smp_120920.3 0.92 1.17e-06 5.99e-05
Smp_102670.1 Smp_125440.1 0.94 6.66e-08 8.20e-06
Smp_102670.1 Smp_129190.1 0.91 2.41e-06 9.93e-05
Smp_102670.1 Smp_133310.1 0.96 1.37e-08 2.82e-06
Smp_102670.1 Smp_133770.1 0.98 6.39e-11 8.79e-08
Smp_102670.1 Smp_134410.1 0.95 2.00e-08 3.63e-06
Smp_102670.1 Smp_135250.1 0.98 6.25e-11 8.66e-08
Smp_102670.1 Smp_145340.1 0.99 1.67e-12 9.10e-09
Smp_102670.1 Smp_145710.1 0.93 2.42e-07 1.99e-05
Smp_148800.1 Smp_102670.1 0.90 3.99e-06 1.00e-04
Smp_102670.1 Smp_149670.1 0.93 2.02e-07 1.75e-05
Smp_152260.1 Smp_102670.1 0.96 3.11e-09 1.06e-06
Smp_102670.1 Smp_152780.1 0.90 3.09e-06 1.00e-04
Smp_102670.1 Smp_153240.1 0.97 2.83e-10 2.27e-07
Smp_102670.1 Smp_154020.1 0.94 7.55e-08 8.93e-06
Smp_102670.1 Smp_154300.1 0.91 1.60e-06 7.45e-05
Smp_154370.1 Smp_102670.1 0.95 2.76e-08 4.52e-06
Smp_102670.1 Smp_155890.1 0.94 1.82e-07 1.63e-05
Smp_102670.1 Smp_157310.1 0.98 2.00e-12 1.01e-08
Smp_102670.1 Smp_159190.1 0.95 3.28e-08 5.07e-06
Smp_166950.1 Smp_102670.1 0.90 4.43e-06 1.00e-04
Smp_168380.1 Smp_102670.1 0.91 1.54e-06 7.23e-05
Smp_102670.1 Smp_169190.1 0.99 2.96e-13 3.13e-09
Smp_102670.1 Smp_178240.1 0.96 7.20e-09 1.83e-06
Smp_102670.1 Smp_179460.1 0.93 3.83e-07 2.73e-05
Smp_102670.1 Smp_179640.1 0.99 1.67e-12 9.10e-09
Smp_102670.1 Smp_182770.1 0.91 2.44e-06 1.00e-04
Smp_102670.1 Smp_183420.1 0.99 1.67e-12 9.10e-09
Smp_102670.1 Smp_184460.1 0.92 6.45e-07 3.92e-05
Smp_102670.1 Smp_184750.1 0.94 1.17e-07 1.20e-05
Smp_185180.1 Smp_102670.1 0.90 3.33e-06 1.00e-04
Smp_185220.1 Smp_102670.1 0.91 1.45e-06 6.95e-05
Smp_102670.1 Smp_185360.1 0.96 8.89e-09 2.11e-06
Smp_102670.1 Smp_194040.1 0.94 1.04e-07 1.11e-05
Smp_102670.1 Smp_194770.1 0.92 1.15e-06 5.92e-05
Smp_102670.1 Smp_195160.1 0.93 3.07e-07 2.34e-05
Smp_102670.1 Smp_197110.1 0.92 6.23e-07 3.83e-05
Smp_202700.1 Smp_102670.1 0.90 2.60e-06 1.00e-04
Smp_102670.1 Smp_204770.1 0.90 4.76e-06 1.00e-04
Smp_205190.1 Smp_102670.1 0.91 1.85e-06 8.24e-05
Smp_102670.1 Smp_205900.1 0.98 2.40e-11 4.76e-08
Smp_102670.1 Smp_206130.1 0.92 6.70e-07 4.02e-05
Smp_206150.1 Smp_102670.1 0.92 5.91e-07 3.69e-05
Smp_102670.1 Smp_214150.1 0.95 4.43e-08 6.22e-06