Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_102020.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_102020.1 0 -0.28 -4.43 0.53 6.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_102020.1 SmLINC00001-IBu 0.85 4.97e-05 8.00e-04
Smp_102020.1 SmLINC00004-IBu 0.80 2.00e-04 2.90e-03
Smp_102020.1 SmLINC01520-IBu 0.86 3.68e-05 6.00e-04
Smp_102020.1 SmLINC02029-IBu 0.86 2.48e-05 5.00e-04
Smp_102020.1 SmLINC02376-IBu 0.85 4.83e-05 8.00e-04
Smp_102020.1 SmLINC02539-IBu 0.84 8.54e-05 1.20e-03
Smp_102020.1 SmLINC02540-IBu 0.80 2.00e-04 2.90e-03
Smp_102020.1 SmLINC02577-IBu 0.88 1.36e-05 3.00e-04
Smp_102020.1 SmLINC02783-IBu 0.93 4.51e-07 2.92e-05
Smp_102020.1 SmLINC02786-IBu 0.88 1.31e-05 3.00e-04
Smp_102020.1 SmLINC03326-IBu 0.87 2.23e-05 4.00e-04
Smp_102020.1 SmLINC03658-IBu 0.82 1.00e-04 1.80e-03
Smp_102020.1 SmLINC04235-IBu 0.92 5.48e-07 3.35e-05
Smp_102020.1 SmLINC04237-IBu 0.89 8.51e-06 2.00e-04
Smp_102020.1 SmLINC04627-IBu 0.97 1.43e-09 5.95e-07
Smp_102020.1 SmLINC05404-IBu 0.85 4.32e-05 7.00e-04
Smp_102020.1 SmLINC05684-IBu 0.92 5.68e-07 3.44e-05
Smp_102020.1 SmLINC06239-IBu 0.93 4.20e-07 2.78e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_102020.1 0 -0.28 -4.43 0.53 6.11
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_191910.1 0 -4.11 -4.11 6.38 13.11
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_102020.1 0.97 2.98e-10 2.34e-07
Smp_102020.1 Smp_004420.3 0.99 1.55e-12 8.72e-09
Smp_102020.1 Smp_016490.2 0.91 1.69e-06 7.73e-05
Smp_102020.1 Smp_028870.1 0.91 2.30e-06 9.60e-05
Smp_102020.1 Smp_077920.1 0.91 1.20e-06 6.07e-05
Smp_102020.1 Smp_085180.1 0.92 9.78e-07 5.25e-05
Smp_102020.1 Smp_102780.1 0.90 2.58e-06 1.00e-04
Smp_102020.1 Smp_105450.1 0.92 7.66e-07 4.42e-05
Smp_102020.1 Smp_105450.2 0.94 1.22e-07 1.24e-05
Smp_102020.1 Smp_130100.1 0.92 1.15e-06 5.90e-05
Smp_102020.1 Smp_130970.1 0.95 3.69e-08 5.50e-06
Smp_102020.1 Smp_131490.1 0.90 2.93e-06 1.00e-04
Smp_102020.1 Smp_136730.1 0.92 1.04e-06 5.50e-05
Smp_102020.1 Smp_137460.1 0.94 1.04e-07 1.11e-05
Smp_102020.1 Smp_137700.1 0.98 3.36e-12 1.39e-08
Smp_102020.1 Smp_137720.1 0.94 1.40e-07 1.36e-05
Smp_102020.1 Smp_138360.1 0.98 5.06e-11 7.58e-08
Smp_102020.1 Smp_139160.1 0.95 3.55e-08 5.35e-06
Smp_102020.1 Smp_139240.1 0.91 1.75e-06 7.94e-05
Smp_102020.1 Smp_144440.1 0.96 7.77e-09 1.93e-06
Smp_102020.1 Smp_159650.1 0.93 3.39e-07 2.51e-05
Smp_102020.1 Smp_162320.1 0.94 1.73e-07 1.57e-05
Smp_102020.1 Smp_164320.1 0.90 3.46e-06 1.00e-04
Smp_102020.1 Smp_164400.1 0.91 1.26e-06 6.29e-05
Smp_102020.1 Smp_175560.1 0.93 4.44e-07 3.02e-05
Smp_102020.1 Smp_181070.1 0.94 8.73e-08 9.86e-06
Smp_102020.1 Smp_187140.1 0.91 1.38e-06 6.70e-05
Smp_102020.1 Smp_191910.1 0.91 1.91e-06 8.42e-05
Smp_102020.1 Smp_194910.1 0.93 2.60e-07 2.09e-05
Smp_102020.1 Smp_205580.1 0.93 3.84e-07 2.73e-05