Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_100600.1 Data

Correlation between Smp_100600.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_100600.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_100600.1 0 -0.51 -2.27 -6.43 -6.43

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_100600.1 SmLINC00037-IBu 0.83 9.27e-05 1.30e-03
Smp_100600.1 SmLINC00133-IBu 0.82 1.00e-04 1.70e-03
Smp_100600.1 SmLINC00282-IBu 0.88 1.01e-05 2.00e-04
Smp_100600.1 SmLINC00784-IBu 0.91 1.26e-06 6.06e-05
Smp_100600.1 SmLINC01637-IBu 0.85 5.66e-05 9.00e-04
Smp_100600.1 SmLINC02255-IBu 0.89 7.81e-06 2.00e-04
Smp_100600.1 SmLINC02630-IBu 0.89 5.78e-06 1.00e-04
Smp_100600.1 SmLINC02657-IBu 0.83 1.00e-04 1.50e-03
Smp_100600.1 SmLINC03848-IBu 0.93 4.34e-07 2.85e-05
Smp_100600.1 SmLINC03930-IBu 0.85 4.77e-05 8.00e-04
Smp_100600.1 SmLINC04366-IBu 0.86 3.44e-05 6.00e-04
Smp_100600.1 SmLINC05284-IBu 0.91 1.73e-06 7.59e-05
Smp_100600.1 SmLINC05716-IBu 0.85 4.30e-05 7.00e-04
Smp_100600.1 SmLINC05720-IBu 0.93 5.00e-07 3.15e-05
Smp_100600.1 SmLINC05989-IBu 0.81 2.00e-04 2.30e-03
Smp_100600.1 SmLINC06535-IBu 0.87 2.13e-05 4.00e-04

Correlation between Smp_100600.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_097800.1 0 -1.17 -2.80 -12.04 -16.29
Smp_100600.1 0 -0.51 -2.27 -6.43 -6.43
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_100600.1 Smp_035200.3 0.90 4.67e-06 1.00e-04
Smp_036270.4 Smp_100600.1 0.92 7.00e-07 4.15e-05
Smp_077690.1 Smp_100600.1 0.91 1.37e-06 6.68e-05
Smp_097800.1 Smp_100600.1 0.90 2.95e-06 1.00e-04
Smp_112090.1 Smp_100600.1 0.90 4.64e-06 1.00e-04
Smp_184760.1 Smp_100600.1 0.96 1.13e-08 2.48e-06
Smp_188900.1 Smp_100600.1 0.90 4.82e-06 1.00e-04