Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_100130.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_100130.2 0 8.47 10.05 8.41 9.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_100130.2 SmLINC00372-IBu 0.83 9.50e-05 1.30e-03
Smp_100130.2 SmLINC06836-IBu 0.84 6.07e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03132-IBu 0 3.76 4.91 1.54 -0.47
SmLINC03953-IBu 0 1.67 3.25 -2.76 -1.08
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_100130.2 0 8.47 10.05 8.41 9.81
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_133230.2 0 6.89 8.18 7.58 7.75
Smp_141630.4 0 12.63 13.76 12.50 12.34
Smp_153210.1 0 3.24 5.11 0.30 -0.00
Smp_159150.1 0 12.28 13.98 12.38 11.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_100130.2 SmLINC03132-IBu 0.90 2.87e-06 1.00e-04
Smp_100130.2 SmLINC03953-IBu 0.91 2.20e-06 9.32e-05
Smp_100130.2 Smp_021340.3 0.90 3.34e-06 1.00e-04
Smp_100130.2 Smp_083380.2 0.90 3.05e-06 1.00e-04
Smp_100130.2 Smp_084940.2 0.92 5.35e-07 3.44e-05
Smp_100130.2 Smp_098370.1 0.90 4.10e-06 1.00e-04
Smp_103540.1 Smp_100130.2 0.90 3.70e-06 1.00e-04
Smp_133230.2 Smp_100130.2 0.90 2.62e-06 1.00e-04
Smp_100130.2 Smp_141630.4 0.91 1.41e-06 6.81e-05
Smp_153210.1 Smp_100130.2 0.90 2.74e-06 1.00e-04
Smp_100130.2 Smp_159150.1 0.91 2.40e-06 9.91e-05