Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_099420.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
Smp_099420.1 0 -2.79 -4.14 -4.04 -2.98

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_099420.1 SmLINC02678-IBu 0.88 1.10e-05 2.00e-04
Smp_099420.1 SmLINC02888-IBu 0.85 5.41e-05 9.00e-04
Smp_099420.1 SmLINC04957-IBu 0.84 8.28e-05 1.20e-03
Smp_099420.1 SmLINC06128-IBu 0.91 1.93e-06 8.19e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_099420.1 0 -2.79 -4.14 -4.04 -2.98
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_099420.1 Smp_018880.1 0.95 2.41e-08 4.12e-06
Smp_099420.1 Smp_085290.3 0.91 2.38e-06 9.85e-05
Smp_099420.1 Smp_102670.1 0.98 1.06e-11 2.86e-08
Smp_099420.1 Smp_133770.1 0.98 6.97e-11 9.30e-08
Smp_099420.1 Smp_134410.1 0.92 5.96e-07 3.71e-05
Smp_099420.1 Smp_153240.1 0.97 1.13e-09 5.52e-07
Smp_099420.1 Smp_169190.1 0.99 1.83e-12 9.63e-09
Smp_099420.1 Smp_178240.1 0.94 6.22e-08 7.83e-06
Smp_099420.1 Smp_184460.1 0.90 3.86e-06 1.00e-04
Smp_099420.1 Smp_185360.1 0.94 1.44e-07 1.39e-05
Smp_099420.1 Smp_206150.1 0.92 1.14e-06 5.88e-05