Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_098890.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_098890.1 SmLINC00372-IBu 0.86 3.55e-05 6.00e-04
Smp_098890.1 SmLINC01316-IBu 0.83 1.00e-04 1.60e-03
Smp_098890.1 SmLINC02026-IBu 0.93 3.99e-07 2.69e-05
Smp_098890.1 SmLINC04430-IBu 0.91 2.14e-06 8.82e-05
Smp_098890.1 SmLINC05559-IBu 0.86 3.36e-05 6.00e-04
Smp_098890.1 SmLINC06490-IBu 0.89 5.19e-06 1.00e-04
Smp_098890.1 SmLINC06700-IBu 0.82 1.00e-04 1.80e-03
Smp_098890.1 SmLINC06836-IBu 0.83 9.18e-05 1.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00192-IBu 0 0.61 2.35 -8.28 -4.07
SmLINC01369-IBu 0 0.67 2.43 -5.36 -2.51
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC03924-IBu 0 0.69 2.22 -1.76 -2.59
SmLINC04077-IBu 0 1.23 3.96 -1.93 -1.93
SmLINC04219-IBu 0 -1.93 4.04 -1.93 -1.93
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC06183-IBu 0 1.58 3.42 -7.62 -7.62
SmLINC06287-IBu 0 0.35 0.50 -4.73 -4.57
SmLINC06494-IBu 0 -1.07 -1.19 -6.36 -6.05
SmLINC06839-IBu 0 -0.39 0.65 -6.55 -6.90
SmLINC07016-IBu 0 1.89 2.73 -4.50 -5.17
SmLINC07019-IBu 0 -0.56 -0.21 -4.43 -4.44
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_014660.1 0 1.27 2.34 -5.37 -7.50
Smp_017020.1 0 0.08 0.95 -6.58 -6.58
Smp_023140.1 0 -0.84 -0.87 -5.26 -4.87
Smp_035640.1 0 0.66 2.47 -3.45 -3.92
Smp_069160.2 0 -0.02 1.03 -5.33 -4.92
Smp_075220.3 0 -0.21 1.05 -2.86 -3.43
Smp_076650.1 0 0.65 2.86 -0.34 -4.53
Smp_084940.1 0 -2.11 1.80 -3.80 -4.78
Smp_097800.3 0 0.13 0.54 -4.95 -4.74
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_106750.1 0 0.07 1.73 -5.83 -8.52
Smp_112930.1 0 1.35 2.48 -6.71 -8.42
Smp_113620.3 0 -0.35 -0.97 -4.77 -3.55
Smp_120740.1 0 -0.36 1.05 -4.86 -4.75
Smp_127790.1 0 -0.50 1.35 -1.97 -4.33
Smp_134100.1 0 0.70 4.69 0.40 -0.45
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_152900.1 0 -0.24 0.96 -3.27 -3.63
Smp_153650.1 0 -0.02 1.72 -2.93 -3.55
Smp_159380.1 0 0.56 1.21 -4.02 -3.82
Smp_180050.1 0 1.06 0.86 -2.29 -5.29
Smp_189980.1 0 1.62 9.93 -1.10 -1.10
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_194110.1 0 0.85 0.42 -9.97 -9.97
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_200830.1 0 0.51 2.30 -3.02 -5.44
Smp_200840.1 0 0.23 -0.00 -8.20 -7.06
Smp_200880.1 0 1.47 2.90 -4.50 -6.34
Smp_202420.1 0 -0.06 2.13 -4.70 -1.89
Smp_205050.1 0 0.07 1.73 -5.83 -8.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_098890.1 SmLINC00192-IBu 0.96 1.02e-08 2.32e-06
Smp_098890.1 SmLINC01369-IBu 0.94 6.62e-08 8.17e-06
Smp_098890.1 SmLINC02026-IBu 0.93 3.99e-07 2.81e-05
Smp_098890.1 SmLINC03924-IBu 0.95 5.59e-08 7.29e-06
Smp_098890.1 SmLINC04077-IBu 0.91 2.03e-06 8.79e-05
Smp_098890.1 SmLINC04219-IBu 0.91 2.45e-06 1.00e-04
Smp_098890.1 SmLINC04430-IBu 0.91 2.14e-06 9.13e-05
Smp_098890.1 SmLINC06183-IBu 0.94 1.82e-07 1.63e-05
Smp_098890.1 SmLINC06287-IBu 0.92 9.75e-07 5.24e-05
Smp_098890.1 SmLINC06494-IBu 0.94 1.79e-07 1.61e-05
Smp_098890.1 SmLINC06839-IBu 0.95 3.15e-08 4.94e-06
Smp_098890.1 SmLINC07016-IBu 0.95 1.96e-08 3.59e-06
Smp_098890.1 SmLINC07019-IBu 0.92 8.29e-07 4.67e-05
Smp_098890.1 Smp_010140.2 0.93 2.66e-07 2.12e-05
Smp_098890.1 Smp_014660.1 0.90 4.86e-06 1.00e-04
Smp_098890.1 Smp_017020.1 0.96 1.45e-08 2.93e-06
Smp_098890.1 Smp_023140.1 0.90 3.30e-06 1.00e-04
Smp_098890.1 Smp_035640.1 0.95 3.09e-08 4.88e-06
Smp_098890.1 Smp_069160.2 0.94 6.40e-08 7.98e-06
Smp_098890.1 Smp_075220.3 0.96 2.52e-09 9.25e-07
Smp_098890.1 Smp_076650.1 0.91 1.45e-06 6.94e-05
Smp_098890.1 Smp_084940.1 0.91 2.25e-06 9.45e-05
Smp_098890.1 Smp_097800.3 0.93 3.01e-07 2.31e-05
Smp_098890.1 Smp_106750.1 0.96 7.96e-09 1.96e-06
Smp_098890.1 Smp_112930.1 0.94 1.80e-07 1.62e-05
Smp_098890.1 Smp_113620.3 0.92 1.03e-06 5.45e-05
Smp_098890.1 Smp_120740.1 0.92 1.15e-06 5.91e-05
Smp_098890.1 Smp_127790.1 0.91 2.43e-06 1.00e-04
Smp_098890.1 Smp_134100.1 0.90 3.31e-06 1.00e-04
Smp_098890.1 Smp_138080.1 0.90 4.76e-06 1.00e-04
Smp_098890.1 Smp_149220.1 0.92 8.10e-07 4.60e-05
Smp_098890.1 Smp_152900.1 0.94 1.07e-07 1.13e-05
Smp_098890.1 Smp_153650.1 0.90 3.00e-06 1.00e-04
Smp_098890.1 Smp_159380.1 0.92 9.16e-07 5.01e-05
Smp_098890.1 Smp_180050.1 0.93 4.20e-07 2.91e-05
Smp_098890.1 Smp_189980.1 0.91 1.95e-06 8.56e-05
Smp_098890.1 Smp_194060.1 0.97 4.82e-10 3.19e-07
Smp_098890.1 Smp_194110.1 0.90 3.61e-06 1.00e-04
Smp_098890.1 Smp_200120.1 0.91 1.68e-06 7.71e-05
Smp_098890.1 Smp_200830.1 0.94 1.11e-07 1.16e-05
Smp_200840.1 Smp_098890.1 0.98 5.99e-11 8.44e-08
Smp_098890.1 Smp_200880.1 0.91 1.75e-06 7.93e-05
Smp_098890.1 Smp_202420.1 0.92 8.85e-07 4.89e-05
Smp_205050.1 Smp_098890.1 0.96 7.96e-09 1.96e-06