Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_098450.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04953-IBu 0 4.15 3.52 7.42 3.10
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06205-IBu 0 0.00 7.73 9.47 9.16
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
Smp_098450.2 0 -2.98 -0.28 2.33 2.12

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_098450.2 SmLINC00548-IBu 0.83 9.84e-05 1.30e-03
Smp_098450.2 SmLINC00769-IBu 0.88 8.92e-06 2.00e-04
Smp_098450.2 SmLINC01139-IBu 0.82 1.00e-04 1.80e-03
Smp_098450.2 SmLINC01231-IBu 0.87 2.47e-05 5.00e-04
Smp_098450.2 SmLINC01431-IBu 0.80 3.00e-04 3.10e-03
Smp_098450.2 SmLINC01538-IBu 0.86 3.79e-05 6.00e-04
Smp_098450.2 SmLINC01733-IBu 0.89 5.04e-06 1.00e-04
Smp_098450.2 SmLINC01746-IBu 0.89 6.33e-06 1.00e-04
Smp_098450.2 SmLINC02546-IBu 0.83 1.00e-04 1.50e-03
Smp_098450.2 SmLINC03309-IBu 0.84 6.69e-05 1.00e-03
Smp_098450.2 SmLINC04432-IBu 0.88 1.20e-05 3.00e-04
Smp_098450.2 SmLINC04475-IBu 0.88 1.15e-05 2.00e-04
Smp_098450.2 SmLINC04637-IBu 0.88 1.37e-05 3.00e-04
Smp_098450.2 SmLINC04663-IBu 0.83 1.00e-04 1.60e-03
Smp_098450.2 SmLINC04684-IBu 0.80 3.00e-04 3.40e-03
Smp_098450.2 SmLINC04747-IBu 0.81 2.00e-04 2.40e-03
Smp_098450.2 SmLINC04953-IBu 0.82 1.00e-04 1.90e-03
Smp_098450.2 SmLINC06010-IBu 0.87 1.88e-05 4.00e-04
Smp_098450.2 SmLINC06205-IBu 0.91 1.56e-06 7.05e-05
Smp_098450.2 SmLINC06418-IBu 0.83 1.00e-04 1.40e-03
Smp_098450.2 SmLINC06444-IBu 0.84 6.11e-05 9.00e-04
Smp_098450.2 SmLINC06449-IBu 0.89 6.52e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_098450.2 0 -2.98 -0.28 2.33 2.12

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034980.2 Smp_098450.2 0.92 1.18e-06 6.01e-05
Smp_056360.3 Smp_098450.2 0.91 1.99e-06 8.68e-05