Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_097800.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_097800.3 0 0.13 0.54 -4.95 -4.74

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_097800.3 SmLINC02026-IBu 0.94 9.43e-08 9.85e-06
Smp_097800.3 SmLINC04430-IBu 0.84 6.71e-05 1.00e-03
Smp_097800.3 SmLINC06490-IBu 0.90 2.52e-06 9.91e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_097800.3 0 0.13 0.54 -4.95 -4.74
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_194060.1 0 0.19 1.68 -10.58 -10.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_098890.1 Smp_097800.3 0.93 3.01e-07 2.31e-05
Smp_194060.1 Smp_097800.3 0.94 7.67e-08 9.03e-06