Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_097800.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
Smp_097800.1 0 -1.17 -2.80 -12.04 -16.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_097800.1 SmLINC02255-IBu 0.82 1.00e-04 1.70e-03
Smp_097800.1 SmLINC02630-IBu 0.87 1.64e-05 3.00e-04
Smp_097800.1 SmLINC05284-IBu 0.81 2.00e-04 2.70e-03
Smp_097800.1 SmLINC05720-IBu 0.84 6.19e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02737-IBu 0 -0.51 -1.91 -5.38 -6.61
SmLINC06212-IBu 0 -0.75 -3.47 -10.55 -10.55
Smp_022730.1 0 -0.73 -1.37 -5.39 -4.86
Smp_026770.1 0 -1.09 -1.79 -4.88 -4.00
Smp_062720.3 0 -1.21 -5.22 -6.55 -7.88
Smp_076890.1 0 -0.50 -0.05 -4.73 -3.71
Smp_097800.1 0 -1.17 -2.80 -12.04 -16.29
Smp_100600.1 0 -0.51 -2.27 -6.43 -6.43
Smp_120390.1 0 -0.82 -4.32 -9.57 -8.37
Smp_155680.1 0 -0.89 -0.19 -4.34 -6.38
Smp_167710.1 0 -1.15 -3.10 -9.21 -8.94
Smp_179300.3 0 -0.68 -3.23 -9.39 -8.12
Smp_180530.2 0 -0.92 -2.89 -6.22 -3.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_097800.1 SmLINC02737-IBu 0.90 4.62e-06 1.00e-04
Smp_097800.1 SmLINC06212-IBu 0.92 6.25e-07 3.84e-05
Smp_022730.1 Smp_097800.1 0.96 2.47e-09 9.14e-07
Smp_097800.1 Smp_026770.1 0.90 3.72e-06 1.00e-04
Smp_062720.3 Smp_097800.1 0.91 1.40e-06 6.78e-05
Smp_097800.1 Smp_076890.1 0.91 1.57e-06 7.36e-05
Smp_097800.1 Smp_100600.1 0.90 2.95e-06 1.00e-04
Smp_097800.1 Smp_120390.1 0.94 1.66e-07 1.53e-05
Smp_097800.1 Smp_155680.1 0.93 4.31e-07 2.96e-05
Smp_097800.1 Smp_167710.1 0.92 1.16e-06 5.95e-05
Smp_097800.1 Smp_179300.3 0.96 8.39e-09 2.03e-06
Smp_180530.2 Smp_097800.1 0.92 8.07e-07 4.58e-05