Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_097750.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_097750.1 SmLINC02255-IBu 0.89 7.54e-06 2.00e-04
Smp_097750.1 SmLINC02630-IBu 0.87 1.54e-05 3.00e-04
Smp_097750.1 SmLINC02657-IBu 0.84 6.04e-05 9.00e-04
Smp_097750.1 SmLINC02678-IBu 0.80 2.00e-04 2.90e-03
Smp_097750.1 SmLINC02888-IBu 0.84 8.33e-05 1.20e-03
Smp_097750.1 SmLINC05989-IBu 0.90 3.84e-06 1.00e-04
Smp_097750.1 SmLINC06128-IBu 0.93 3.21e-07 2.31e-05
Smp_097750.1 SmLINC06535-IBu 0.86 3.83e-05 7.00e-04
Smp_097750.1 SmLINC06892-IBu 0.85 5.24e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_055220.2 0 -2.15 -2.21 -13.10 -13.10
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_097750.1 Smp_018880.1 0.94 1.91e-07 1.69e-05
Smp_097750.1 Smp_035090.2 0.90 3.18e-06 1.00e-04
Smp_097750.1 Smp_051230.4 0.90 3.73e-06 1.00e-04
Smp_097750.1 Smp_055220.2 0.90 4.79e-06 1.00e-04
Smp_097750.1 Smp_085290.3 0.91 1.30e-06 6.44e-05
Smp_097750.1 Smp_102670.1 0.91 1.95e-06 8.56e-05
Smp_106390.1 Smp_097750.1 0.96 2.54e-09 9.29e-07
Smp_097750.1 Smp_134410.1 0.93 5.02e-07 3.29e-05
Smp_097750.1 Smp_145810.2 0.96 3.71e-09 1.19e-06
Smp_097750.1 Smp_149670.1 0.98 1.47e-10 1.49e-07
Smp_150690.2 Smp_097750.1 0.93 3.53e-07 2.58e-05
Smp_097750.1 Smp_168080.2 0.90 3.12e-06 1.00e-04
Smp_097750.1 Smp_184460.1 0.93 2.54e-07 2.05e-05
Smp_097750.1 Smp_185360.1 0.94 7.38e-08 8.80e-06
Smp_097750.1 Smp_188900.1 0.97 1.81e-09 7.45e-07
Smp_097750.1 Smp_195070.1 0.93 1.97e-07 1.72e-05
Smp_097750.1 Smp_202140.1 0.90 3.32e-06 1.00e-04
Smp_097750.1 Smp_206150.1 0.91 1.75e-06 7.94e-05