Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_096830.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
Smp_096830.1 0 -1.12 -4.58 -7.61 -5.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_096830.1 SmLINC02255-IBu 0.81 2.00e-04 2.30e-03
Smp_096830.1 SmLINC02657-IBu 0.80 2.00e-04 2.70e-03
Smp_096830.1 SmLINC04957-IBu 0.81 1.00e-04 2.30e-03
Smp_096830.1 SmLINC06128-IBu 0.84 8.06e-05 1.20e-03