Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_096020.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_096020.1 SmLINC03769-IBu 0.81 2.00e-04 2.70e-03
Smp_096020.1 SmLINC04957-IBu 0.80 3.00e-04 3.40e-03
Smp_096020.1 SmLINC06890-IBu 0.93 4.30e-07 2.83e-05
Smp_096020.1 SmLINC06903-IBu 0.85 5.25e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00093-IBu 0 -1.11 -3.33 -5.06 -7.16
SmLINC00568-IBu 0 -1.41 -4.15 -10.91 -11.85
SmLINC01675-IBu 0 -0.80 -1.29 -3.92 -5.49
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
Smp_009310.4 0 -2.57 -4.50 -7.03 -8.00
Smp_010000.1 0 -1.51 -3.27 -4.59 -5.75
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_034420.1 0 -1.76 -6.68 -4.27 -4.65
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_062720.2 0 -4.51 -3.77 -3.48 -4.71
Smp_080920.3 0 -0.58 -3.50 -2.71 -4.51
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_124340.1 0 -2.62 -4.99 -7.42 -3.75
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_170800.1 0 -1.03 -10.36 -11.70 -1.07
Smp_178630.1 0 -1.78 -5.50 -9.26 -9.26
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_183020.13 0 -3.91 -2.91 -8.65 -5.43
Smp_200320.1 0 -2.27 -7.31 -5.59 -8.81
Smp_205550.1 0 -1.80 -2.45 -3.88 -5.14
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_096020.1 SmLINC00093-IBu 0.97 1.60e-09 6.89e-07
Smp_096020.1 SmLINC00568-IBu 0.94 1.21e-07 1.23e-05
Smp_096020.1 SmLINC01675-IBu 0.92 8.73e-07 4.85e-05
Smp_096020.1 SmLINC06890-IBu 0.93 4.30e-07 2.96e-05
Smp_096020.1 Smp_009310.4 0.97 5.13e-10 3.32e-07
Smp_010000.1 Smp_096020.1 0.92 8.85e-07 4.89e-05
Smp_096020.1 Smp_028990.3 0.93 2.95e-07 2.28e-05
Smp_096020.1 Smp_034420.1 0.99 1.51e-14 5.08e-10
Smp_043670.2 Smp_096020.1 0.95 2.25e-08 3.93e-06
Smp_096020.1 Smp_062720.2 0.90 3.12e-06 1.00e-04
Smp_096020.1 Smp_080920.3 0.90 4.50e-06 1.00e-04
Smp_124340.1 Smp_096020.1 0.93 4.74e-07 3.16e-05
Smp_140270.1 Smp_096020.1 0.90 3.10e-06 1.00e-04
Smp_170800.1 Smp_096020.1 0.94 1.02e-07 1.10e-05
Smp_178630.1 Smp_096020.1 0.94 1.47e-07 1.41e-05
Smp_182890.1 Smp_096020.1 0.94 1.57e-07 1.47e-05
Smp_183020.13 Smp_096020.1 0.94 1.79e-07 1.61e-05
Smp_200320.1 Smp_096020.1 0.93 4.42e-07 3.01e-05
Smp_096020.1 Smp_205550.1 0.92 1.19e-06 6.04e-05
Smp_205860.1 Smp_096020.1 0.96 7.01e-09 1.80e-06