Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_095500.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
Smp_095500.1 0 6.31 4.28 7.08 7.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_095500.1 SmLINC00369-IBu 0.80 2.00e-04 2.70e-03
Smp_095500.1 SmLINC00376-IBu 0.96 8.79e-09 1.96e-06
Smp_095500.1 SmLINC01171-IBu 0.83 9.28e-05 1.30e-03
Smp_095500.1 SmLINC01431-IBu 0.80 3.00e-04 3.30e-03
Smp_095500.1 SmLINC02084-IBu 0.81 1.00e-04 2.20e-03
Smp_095500.1 SmLINC02255-IBu -0.81 2.00e-04 2.30e-03
Smp_095500.1 SmLINC02630-IBu -0.84 6.98e-05 1.00e-03
Smp_095500.1 SmLINC03108-IBu 0.81 1.00e-04 2.20e-03
Smp_095500.1 SmLINC03236-IBu 0.90 2.67e-06 1.00e-04
Smp_095500.1 SmLINC04421-IBu 0.81 2.00e-04 2.40e-03
Smp_095500.1 SmLINC04684-IBu 0.81 2.00e-04 2.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_095500.1 0 6.31 4.28 7.08 7.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083990.2 Smp_095500.1 0.96 4.38e-09 1.32e-06