Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_095460.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_095460.1 0 -0.21 -2.74 -7.08 -8.45

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_095460.1 SmLINC04271-IBu 0.79 3.00e-04 3.00e-03
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_095460.1 0 -0.21 -2.74 -7.08 -8.45

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_095460.1 SmLINC00037-IBu 0.94 1.79e-07 1.53e-05
Smp_095460.1 SmLINC00133-IBu 0.95 1.58e-08 2.91e-06
Smp_095460.1 SmLINC00282-IBu 0.95 1.97e-08 3.38e-06
Smp_095460.1 SmLINC00294-IBu 0.80 3.00e-04 3.20e-03
Smp_095460.1 SmLINC00784-IBu 0.88 1.28e-05 3.00e-04
Smp_095460.1 SmLINC00893-IBu 0.82 1.00e-04 1.80e-03
Smp_095460.1 SmLINC01462-IBu 0.87 1.62e-05 3.00e-04
Smp_095460.1 SmLINC01486-IBu 0.92 6.41e-07 3.74e-05
Smp_095460.1 SmLINC01637-IBu 0.89 6.05e-06 1.00e-04
Smp_095460.1 SmLINC02255-IBu 0.86 3.46e-05 6.00e-04
Smp_095460.1 SmLINC02630-IBu 0.84 7.06e-05 1.00e-03
Smp_095460.1 SmLINC02657-IBu 0.84 8.21e-05 1.20e-03
Smp_095460.1 SmLINC03056-IBu 0.87 1.67e-05 3.00e-04
Smp_095460.1 SmLINC03362-IBu 0.85 4.40e-05 7.00e-04
Smp_095460.1 SmLINC03848-IBu 0.95 5.26e-08 6.60e-06
Smp_095460.1 SmLINC03930-IBu 0.97 9.50e-10 4.56e-07
Smp_095460.1 SmLINC04075-IBu 0.89 8.00e-06 2.00e-04
Smp_095460.1 SmLINC04106-IBu 0.80 3.00e-04 3.20e-03
Smp_095460.1 SmLINC04366-IBu 0.91 2.34e-06 9.39e-05
Smp_095460.1 SmLINC05284-IBu 0.88 1.34e-05 3.00e-04
Smp_095460.1 SmLINC05716-IBu 0.92 7.48e-07 4.17e-05
Smp_095460.1 SmLINC05720-IBu 0.86 3.02e-05 5.00e-04
Smp_095460.1 SmLINC06210-IBu 0.83 1.00e-04 1.40e-03
Smp_095460.1 SmLINC06535-IBu 0.91 1.51e-06 6.89e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_095460.1 0 -0.21 -2.74 -7.08 -8.45
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 Smp_095460.1 0.99 1.64e-12 8.99e-09
Smp_095460.1 Smp_035200.3 0.92 9.81e-07 5.26e-05
Smp_095460.1 Smp_036270.4 0.97 1.11e-09 5.47e-07
Smp_077690.1 Smp_095460.1 0.90 4.00e-06 1.00e-04
Smp_095460.1 Smp_111640.1 0.93 3.77e-07 2.70e-05
Smp_095460.1 Smp_112090.1 0.94 1.12e-07 1.17e-05
Smp_125070.1 Smp_095460.1 0.94 8.03e-08 9.31e-06
Smp_095460.1 Smp_168080.2 0.93 3.62e-07 2.62e-05
Smp_095460.1 Smp_182090.1 0.96 7.74e-09 1.92e-06
Smp_095460.1 Smp_184710.1 0.91 2.03e-06 8.81e-05
Smp_095460.1 Smp_204360.1 0.94 1.74e-07 1.58e-05
Smp_095460.1 Smp_205450.1 0.90 4.48e-06 1.00e-04