Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_095350.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_095350.1 0 0.76 -2.26 1.00 7.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_095350.1 SmLINC02029-IBu 0.83 1.00e-04 1.50e-03
Smp_095350.1 SmLINC02376-IBu 0.86 3.81e-05 7.00e-04
Smp_095350.1 SmLINC02577-IBu 0.80 3.00e-04 3.40e-03
Smp_095350.1 SmLINC02783-IBu 0.84 6.92e-05 1.00e-03
Smp_095350.1 SmLINC02786-IBu 0.83 1.00e-04 1.40e-03
Smp_095350.1 SmLINC03658-IBu 0.81 2.00e-04 2.40e-03
Smp_095350.1 SmLINC04235-IBu 0.93 3.79e-07 2.59e-05
Smp_095350.1 SmLINC04627-IBu 0.88 9.89e-06 2.00e-04
Smp_095350.1 SmLINC05404-IBu 0.87 2.20e-05 4.00e-04
Smp_095350.1 SmLINC05684-IBu 0.86 2.63e-05 5.00e-04
Smp_095350.1 SmLINC06239-IBu 0.98 1.38e-10 1.31e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_095350.1 0 0.76 -2.26 1.00 7.32
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_191910.1 0 -4.11 -4.11 6.38 13.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_095350.1 0.99 1.13e-12 7.14e-09
Smp_000410.1 Smp_095350.1 0.90 3.13e-06 1.00e-04
Smp_000420.1 Smp_095350.1 0.93 2.43e-07 1.99e-05
Smp_004420.3 Smp_095350.1 0.93 3.57e-07 2.60e-05
Smp_033250.1 Smp_095350.1 0.92 1.04e-06 5.50e-05
Smp_077920.1 Smp_095350.1 0.93 3.01e-07 2.31e-05
Smp_130970.1 Smp_095350.1 0.99 1.35e-16 2.22e-11
Smp_131110.2 Smp_095350.1 0.95 4.75e-08 6.52e-06
Smp_137460.1 Smp_095350.1 0.96 1.17e-08 2.54e-06
Smp_137700.1 Smp_095350.1 0.93 1.98e-07 1.73e-05
Smp_138360.1 Smp_095350.1 0.97 1.16e-09 5.62e-07
Smp_139160.1 Smp_095350.1 0.90 4.82e-06 1.00e-04
Smp_144440.1 Smp_095350.1 0.97 9.13e-10 4.80e-07
Smp_152150.1 Smp_095350.1 0.92 5.99e-07 3.73e-05
Smp_155310.1 Smp_095350.1 0.92 5.79e-07 3.64e-05
Smp_164400.1 Smp_095350.1 0.92 7.28e-07 4.27e-05
Smp_175560.1 Smp_095350.1 0.95 1.78e-08 3.36e-06
Smp_181070.1 Smp_095350.1 0.90 3.51e-06 1.00e-04
Smp_191910.1 Smp_095350.1 0.93 2.31e-07 1.92e-05