Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_093740.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
Smp_093740.2 0 1.50 0.51 -2.09 -4.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_093740.2 SmLINC00026-IBu 0.88 1.29e-05 3.00e-04
Smp_093740.2 SmLINC00294-IBu 0.80 3.00e-04 3.40e-03
Smp_093740.2 SmLINC00893-IBu 0.81 2.00e-04 2.60e-03
Smp_093740.2 SmLINC01429-IBu 0.87 2.01e-05 4.00e-04
Smp_093740.2 SmLINC01979-IBu 0.82 1.00e-04 1.70e-03
Smp_093740.2 SmLINC03111-IBu 0.89 8.52e-06 2.00e-04
Smp_093740.2 SmLINC03116-IBu 0.82 1.00e-04 2.00e-03
Smp_093740.2 SmLINC03395-IBu 0.92 7.54e-07 4.20e-05
Smp_093740.2 SmLINC03443-IBu 0.88 1.06e-05 2.00e-04
Smp_093740.2 SmLINC04074-IBu 0.88 1.05e-05 2.00e-04
Smp_093740.2 SmLINC04129-IBu 0.83 9.67e-05 1.30e-03
Smp_093740.2 SmLINC04271-IBu 0.86 3.54e-05 6.00e-04
Smp_093740.2 SmLINC05840-IBu 0.83 1.00e-04 1.50e-03
Smp_093740.2 SmLINC05887-IBu 0.82 1.00e-04 2.00e-03
Smp_093740.2 SmLINC06138-IBu 0.82 1.00e-04 1.80e-03
Smp_093740.2 SmLINC06436-IBu 0.80 3.00e-04 3.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_093740.2 0 1.50 0.51 -2.09 -4.86
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_193990.1 0 2.54 2.04 -11.18 -11.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176230.2 Smp_093740.2 0.91 1.87e-06 8.32e-05
Smp_193700.1 Smp_093740.2 0.90 3.78e-06 1.00e-04
Smp_193990.1 Smp_093740.2 0.92 1.13e-06 5.81e-05