Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_093690.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_093690.1 0 0.09 0.67 -3.40 -3.42

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_093690.1 SmLINC00372-IBu 0.86 3.51e-05 6.00e-04
Smp_093690.1 SmLINC01316-IBu 0.89 5.80e-06 1.00e-04
Smp_093690.1 SmLINC02646-IBu 0.82 1.00e-04 1.70e-03
Smp_093690.1 SmLINC06490-IBu 0.81 2.00e-04 2.30e-03
Smp_093690.1 SmLINC06646-IBu 0.88 1.11e-05 2.00e-04
Smp_093690.1 SmLINC06836-IBu 0.81 2.00e-04 2.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_093690.1 0 0.09 0.67 -3.40 -3.42
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.3 Smp_093690.1 0.90 3.47e-06 1.00e-04
Smp_093690.1 Smp_059340.3 0.92 8.69e-07 4.83e-05
Smp_168800.1 Smp_093690.1 0.92 1.12e-06 5.79e-05