Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_092880.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
Smp_092880.1 0 -1.02 -1.51 -9.62 -13.17

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_092880.1 SmLINC01431-IBu -0.82 1.00e-04 1.90e-03
Smp_092880.1 SmLINC02084-IBu -0.80 3.00e-04 3.40e-03
Smp_092880.1 SmLINC02255-IBu 0.85 4.25e-05 7.00e-04
Smp_092880.1 SmLINC02630-IBu 0.84 6.90e-05 1.00e-03
Smp_092880.1 SmLINC02657-IBu 0.81 2.00e-04 2.60e-03
Smp_092880.1 SmLINC04421-IBu -0.82 1.00e-04 1.70e-03
Smp_092880.1 SmLINC05284-IBu 0.84 6.26e-05 1.00e-03
Smp_092880.1 SmLINC05720-IBu 0.81 1.00e-04 2.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00996-IBu 0 -0.50 -1.19 -3.39 -5.19
Smp_006320.1 0 -1.11 -1.68 -4.98 -4.63
Smp_021540.1 0 -0.87 -1.15 -5.24 -5.25
Smp_036270.2 0 -0.92 -1.44 -5.86 -5.63
Smp_053940.1 0 -1.21 -1.57 -5.40 -5.18
Smp_092880.1 0 -1.02 -1.51 -9.62 -13.17

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_092880.1 SmLINC00996-IBu 0.90 2.57e-06 1.00e-04
Smp_092880.1 Smp_006320.1 0.93 3.89e-07 2.76e-05
Smp_092880.1 Smp_021540.1 0.90 4.58e-06 1.00e-04
Smp_092880.1 Smp_036270.2 0.93 5.13e-07 3.34e-05
Smp_092880.1 Smp_053940.1 0.91 2.44e-06 1.00e-04