Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_092320.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
Smp_092320.2 0 10.35 10.97 10.62 9.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_092320.2 SmLINC06700-IBu 0.8 3.00e-04 3.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_064590.3 0 9.71 10.57 10.06 10.55
Smp_092320.2 0 10.35 10.97 10.62 9.79
Smp_139090.2 0 10.81 12.07 11.53 10.71
Smp_158450.1 0 12.55 12.76 12.56 12.42

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_092320.2 Smp_033950.3 0.91 2.38e-06 9.86e-05
Smp_092320.2 Smp_064590.3 0.91 2.46e-06 1.00e-04
Smp_092320.2 Smp_139090.2 0.91 1.97e-06 8.63e-05
Smp_158450.1 Smp_092320.2 0.92 8.60e-07 4.80e-05