Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_091390.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
Smp_091390.1 0 -0.40 -2.18 -5.03 -4.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_091390.1 SmLINC00554-IBu 0.87 1.53e-05 3.00e-04
Smp_091390.1 SmLINC00556-IBu 0.82 1.00e-04 1.70e-03
Smp_091390.1 SmLINC03486-IBu 0.81 2.00e-04 2.40e-03
Smp_091390.1 SmLINC03849-IBu 0.80 2.00e-04 2.80e-03