Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_091190.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_091190.1 0 2.07 2.52 -8.48 -3.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_091190.1 SmLINC01316-IBu 0.80 2.00e-04 3.10e-03
Smp_091190.1 SmLINC02646-IBu 0.86 2.75e-05 5.00e-04
Smp_091190.1 SmLINC06646-IBu 0.94 9.99e-08 1.02e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_091190.1 0 2.07 2.52 -8.48 -3.36
Smp_099160.4 0 11.96 13.30 11.03 12.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_091190.1 Smp_017650.1 0.92 6.28e-07 3.85e-05
Smp_091190.1 Smp_021340.3 0.92 7.82e-07 4.49e-05
Smp_091190.1 Smp_033950.3 0.92 7.02e-07 4.16e-05
Smp_091190.1 Smp_040970.3 0.92 9.87e-07 5.28e-05
Smp_091190.1 Smp_059340.3 0.90 3.66e-06 1.00e-04
Smp_091190.1 Smp_099160.4 0.91 2.17e-06 9.23e-05