Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_090930.5 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06021-IBu 0 0.49 1.13 -8.68 -8.68
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_090930.5 0 0.88 1.41 -11.45 -5.15

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_090930.5 SmLINC00372-IBu 0.85 4.79e-05 8.00e-04
Smp_090930.5 SmLINC02026-IBu 0.83 9.97e-05 1.40e-03
Smp_090930.5 SmLINC03395-IBu 0.81 2.00e-04 2.70e-03
Smp_090930.5 SmLINC04074-IBu 0.80 2.00e-04 2.80e-03
Smp_090930.5 SmLINC06021-IBu 0.82 1.00e-04 2.10e-03
Smp_090930.5 SmLINC06489-IBu 0.83 1.00e-04 1.50e-03
Smp_090930.5 SmLINC06490-IBu 0.88 1.26e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02322-IBu 0 3.00 3.04 -2.38 -2.45
SmLINC04065-IBu 0 1.68 2.43 -5.86 -2.73
SmLINC04259-IBu 0 0.67 0.50 -4.21 -5.86
SmLINC06183-IBu 0 1.58 3.42 -7.62 -7.62
SmLINC07016-IBu 0 1.89 2.73 -4.50 -5.17
Smp_005260.2 0 -0.36 -1.30 -5.79 -5.89
Smp_023140.1 0 -0.84 -0.87 -5.26 -4.87
Smp_035290.1 0 -2.51 -6.13 -0.77 0.19
Smp_035640.1 0 0.66 2.47 -3.45 -3.92
Smp_069160.2 0 -0.02 1.03 -5.33 -4.92
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_105420.2 0 0.72 -0.11 -12.04 -12.04
Smp_112930.1 0 1.35 2.48 -6.71 -8.42
Smp_113620.3 0 -0.35 -0.97 -4.77 -3.55
Smp_139980.1 0 1.20 1.27 -1.25 -4.01
Smp_146710.1 0 2.31 2.58 -1.48 -1.30
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_151220.1 0 1.28 1.74 -3.16 -3.91
Smp_155690.1 0 0.49 1.13 -3.13 -4.07
Smp_158680.1 0 0.18 0.75 -3.19 -3.53
Smp_160670.1 0 1.07 2.08 -4.35 -3.20
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_192030.1 0 1.02 1.31 -3.21 -4.10
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_194110.1 0 0.85 0.42 -9.97 -9.97
Smp_200840.1 0 0.23 -0.00 -8.20 -7.06
Smp_202340.1 0 0.90 1.72 -6.17 -6.91
Smp_205060.1 0 0.36 1.28 -6.63 -10.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_090930.5 SmLINC02322-IBu 0.93 2.58e-07 2.07e-05
Smp_090930.5 SmLINC04065-IBu 0.90 2.63e-06 1.00e-04
Smp_090930.5 SmLINC04259-IBu 0.94 1.37e-07 1.34e-05
Smp_090930.5 SmLINC06183-IBu 0.91 1.83e-06 8.19e-05
Smp_090930.5 SmLINC07016-IBu 0.92 1.18e-06 5.99e-05
Smp_090930.5 Smp_005260.2 0.95 3.03e-08 4.81e-06
Smp_090930.5 Smp_023140.1 0.90 3.31e-06 1.00e-04
Smp_090930.5 Smp_035290.1 -0.91 1.44e-06 6.92e-05
Smp_090930.5 Smp_035640.1 0.94 1.68e-07 1.54e-05
Smp_090930.5 Smp_069160.2 0.94 9.75e-08 1.06e-05
Smp_090930.5 Smp_105420.2 0.95 5.24e-08 6.97e-06
Smp_090930.5 Smp_112930.1 0.90 2.93e-06 1.00e-04
Smp_090930.5 Smp_113620.3 0.90 2.76e-06 1.00e-04
Smp_090930.5 Smp_139980.1 0.91 1.63e-06 7.55e-05
Smp_090930.5 Smp_146710.1 0.97 1.00e-09 5.11e-07
Smp_090930.5 Smp_149220.1 0.91 2.36e-06 9.77e-05
Smp_090930.5 Smp_151220.1 0.90 4.18e-06 1.00e-04
Smp_090930.5 Smp_155690.1 0.92 6.14e-07 3.79e-05
Smp_090930.5 Smp_158680.1 0.95 2.00e-08 3.63e-06
Smp_090930.5 Smp_160670.1 0.92 9.86e-07 5.28e-05
Smp_090930.5 Smp_184180.1 0.90 3.63e-06 1.00e-04
Smp_090930.5 Smp_192030.1 0.90 4.28e-06 1.00e-04
Smp_090930.5 Smp_194060.1 0.91 1.24e-06 6.24e-05
Smp_090930.5 Smp_194110.1 0.90 4.53e-06 1.00e-04
Smp_090930.5 Smp_200840.1 0.92 7.17e-07 4.22e-05
Smp_090930.5 Smp_202340.1 0.94 1.00e-07 1.08e-05
Smp_090930.5 Smp_205060.1 0.90 4.65e-06 1.00e-04