Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_090140.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
Smp_090140.1 0 2.57 9.09 11.94 12.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_090140.1 SmLINC00001-IBu 0.80 3.00e-04 3.20e-03
Smp_090140.1 SmLINC00004-IBu 0.82 1.00e-04 2.00e-03
Smp_090140.1 SmLINC00369-IBu 0.87 1.81e-05 4.00e-04
Smp_090140.1 SmLINC00525-IBu 0.82 1.00e-04 1.80e-03
Smp_090140.1 SmLINC01084-IBu 0.86 2.57e-05 5.00e-04
Smp_090140.1 SmLINC01122-IBu 0.92 7.96e-07 4.36e-05
Smp_090140.1 SmLINC01431-IBu 0.86 2.58e-05 5.00e-04
Smp_090140.1 SmLINC01432-IBu 0.81 1.00e-04 2.30e-03
Smp_090140.1 SmLINC01538-IBu 0.82 1.00e-04 1.70e-03
Smp_090140.1 SmLINC01569-IBu 0.90 4.05e-06 1.00e-04
Smp_090140.1 SmLINC01733-IBu 0.89 8.37e-06 2.00e-04
Smp_090140.1 SmLINC02394-IBu 0.83 1.00e-04 1.40e-03
Smp_090140.1 SmLINC04421-IBu 0.84 8.30e-05 1.20e-03
Smp_090140.1 SmLINC04423-IBu 0.83 1.00e-04 1.60e-03
Smp_090140.1 SmLINC04478-IBu 0.91 1.68e-06 7.42e-05
Smp_090140.1 SmLINC04521-IBu 0.90 2.94e-06 1.00e-04
Smp_090140.1 SmLINC05274-IBu -0.80 3.00e-04 3.30e-03
Smp_090140.1 SmLINC05289-IBu 0.85 5.77e-05 9.00e-04
Smp_090140.1 SmLINC06024-IBu 0.86 3.59e-05 6.00e-04
Smp_090140.1 SmLINC06145-IBu 0.82 1.00e-04 1.80e-03
Smp_090140.1 SmLINC06449-IBu 0.80 3.00e-04 3.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00163-IBu 0 -4.50 -0.66 3.09 4.09
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01754-IBu 0 2.45 3.32 7.33 8.04
SmLINC02250-IBu 0 0.00 7.26 10.81 11.09
SmLINC04404-IBu 0 0.00 0.00 8.28 8.99
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
Smp_001410.1 0 -0.48 1.28 4.40 4.84
Smp_003330.1 0 -1.88 -0.84 3.09 3.58
Smp_003610.2 0 2.58 2.54 6.59 7.15
Smp_010380.1 0 1.17 2.73 4.90 5.33
Smp_014430.1 0 -0.76 -1.15 4.00 4.28
Smp_018720.1 0 0.90 1.96 4.57 4.98
Smp_021790.2 0 -3.20 -1.56 2.95 3.87
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_025830.1 0 -0.75 -1.09 3.58 4.15
Smp_026340.1 0 -0.76 -1.34 2.33 3.13
Smp_027500.1 0 -0.52 1.53 4.18 4.77
Smp_037530.1 0 -0.36 -0.67 3.45 4.52
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050760.1 0 -0.37 1.37 4.18 4.84
Smp_051060.1 0 2.21 3.48 5.78 6.52
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_055900.1 0 -8.50 -8.50 3.36 4.13
Smp_060220.1 0 0.75 -0.46 4.56 5.32
Smp_063330.1 0 0.85 2.04 5.71 6.49
Smp_063380.1 0 1.26 1.43 3.90 4.53
Smp_068710.1 0 -0.37 1.37 3.96 4.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_091300.1 0 -0.26 -3.28 2.27 3.01
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_096560.1 0 0.31 0.72 4.48 4.75
Smp_105190.1 0 -0.76 0.25 3.38 3.64
Smp_123220.1 0 0.00 1.43 6.66 7.13
Smp_127930.1 0 0.51 1.34 3.29 4.16
Smp_129450.1 0 1.12 2.82 4.52 5.24
Smp_133430.1 0 0.76 0.64 6.00 6.31
Smp_142750.1 0 -0.52 0.37 4.05 4.78
Smp_149110.1 0 -3.42 -1.42 2.06 2.26
Smp_165480.1 0 2.20 2.03 5.42 5.97
Smp_166500.2 0 -9.58 -3.24 2.58 2.78
Smp_172020.1 0 0.89 0.19 3.81 4.25
Smp_176890.1 0 0.21 0.06 3.80 4.79
Smp_194360.1 0 -0.29 1.14 4.33 4.96
Smp_201020.1 0 -2.02 0.47 5.41 5.75
Smp_201030.1 0 -0.08 -0.27 5.30 5.74
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_203780.1 0 -0.56 -2.16 2.17 3.14
Smp_205510.1 0 -1.83 -1.83 4.36 5.09
Smp_212860.1 0 -0.24 0.04 3.38 3.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_090140.1 SmLINC00163-IBu 0.93 4.64e-07 3.12e-05
Smp_090140.1 SmLINC01122-IBu 0.92 7.96e-07 4.54e-05
Smp_090140.1 SmLINC01569-IBu 0.90 4.05e-06 1.00e-04
Smp_090140.1 SmLINC01754-IBu 0.94 7.82e-08 9.15e-06
Smp_090140.1 SmLINC02250-IBu 0.93 2.02e-07 1.75e-05
Smp_090140.1 SmLINC04404-IBu 0.91 1.82e-06 8.14e-05
Smp_090140.1 SmLINC04478-IBu 0.91 1.68e-06 7.69e-05
Smp_090140.1 SmLINC04521-IBu 0.90 2.94e-06 1.00e-04
Smp_090140.1 Smp_001410.1 0.92 5.99e-07 3.72e-05
Smp_090140.1 Smp_003330.1 0.90 4.33e-06 1.00e-04
Smp_090140.1 Smp_003610.2 0.94 9.31e-08 1.03e-05
Smp_090140.1 Smp_010380.1 0.92 6.19e-07 3.81e-05
Smp_090140.1 Smp_014430.1 0.92 5.48e-07 3.50e-05
Smp_090140.1 Smp_018720.1 0.95 4.29e-08 6.09e-06
Smp_090140.1 Smp_021790.2 0.90 4.29e-06 1.00e-04
Smp_090140.1 Smp_024180.1 0.90 2.82e-06 1.00e-04
Smp_090140.1 Smp_024180.2 0.90 3.41e-06 1.00e-04
Smp_090140.1 Smp_025830.1 0.90 3.53e-06 1.00e-04
Smp_090140.1 Smp_026340.1 0.91 1.94e-06 8.53e-05
Smp_090140.1 Smp_027500.1 0.90 3.93e-06 1.00e-04
Smp_090140.1 Smp_037530.1 0.90 4.73e-06 1.00e-04
Smp_090140.1 Smp_040970.2 0.94 1.73e-07 1.58e-05
Smp_090140.1 Smp_050760.1 0.91 1.62e-06 7.50e-05
Smp_090140.1 Smp_051060.1 0.90 3.83e-06 1.00e-04
Smp_090140.1 Smp_052280.2 0.90 3.40e-06 1.00e-04
Smp_090140.1 Smp_055900.1 0.90 4.05e-06 1.00e-04
Smp_090140.1 Smp_060220.1 0.93 3.14e-07 2.38e-05
Smp_090140.1 Smp_063330.1 0.90 3.70e-06 1.00e-04
Smp_090140.1 Smp_063380.1 0.93 3.61e-07 2.62e-05
Smp_090140.1 Smp_068710.1 0.90 4.55e-06 1.00e-04
Smp_090140.1 Smp_079420.1 0.92 9.80e-07 5.26e-05
Smp_090140.1 Smp_091300.1 0.90 4.57e-06 1.00e-04
Smp_090140.1 Smp_094050.1 0.92 6.56e-07 3.97e-05
Smp_090140.1 Smp_096560.1 0.90 4.46e-06 1.00e-04
Smp_090140.1 Smp_105190.1 0.92 7.85e-07 4.50e-05
Smp_090140.1 Smp_123220.1 0.92 1.17e-06 5.98e-05
Smp_090140.1 Smp_127930.1 0.90 3.60e-06 1.00e-04
Smp_090140.1 Smp_129450.1 0.91 1.91e-06 8.43e-05
Smp_090140.1 Smp_133430.1 0.90 3.89e-06 1.00e-04
Smp_090140.1 Smp_142750.1 0.92 6.84e-07 4.08e-05
Smp_090140.1 Smp_149110.1 0.90 4.37e-06 1.00e-04
Smp_090140.1 Smp_165480.1 0.90 4.53e-06 1.00e-04
Smp_090140.1 Smp_166500.2 0.90 2.52e-06 1.00e-04
Smp_090140.1 Smp_172020.1 0.92 7.60e-07 4.40e-05
Smp_090140.1 Smp_176890.1 0.90 3.74e-06 1.00e-04
Smp_090140.1 Smp_194360.1 0.90 3.13e-06 1.00e-04
Smp_201020.1 Smp_090140.1 0.90 3.16e-06 1.00e-04
Smp_090140.1 Smp_201030.1 0.91 1.33e-06 6.53e-05
Smp_090140.1 Smp_203090.1 0.90 4.38e-06 1.00e-04
Smp_090140.1 Smp_203780.1 0.91 2.49e-06 1.00e-04
Smp_090140.1 Smp_205510.1 0.92 5.37e-07 3.45e-05
Smp_090140.1 Smp_212860.1 0.92 1.01e-06 5.39e-05