Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_089570.1 Data

Correlation between Smp_089570.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_089570.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_089570.1 0 0.84 -1.91 2.60 3.28

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_089570.1 SmLINC00001-IBu 0.81 2.00e-04 2.60e-03
Smp_089570.1 SmLINC00004-IBu 0.83 1.00e-04 1.50e-03
Smp_089570.1 SmLINC00369-IBu 0.87 1.97e-05 4.00e-04
Smp_089570.1 SmLINC00525-IBu 0.83 1.00e-04 1.50e-03
Smp_089570.1 SmLINC00633-IBu 0.82 1.00e-04 1.70e-03
Smp_089570.1 SmLINC01084-IBu 0.85 4.72e-05 8.00e-04
Smp_089570.1 SmLINC01122-IBu 0.86 3.88e-05 7.00e-04
Smp_089570.1 SmLINC01316-IBu -0.82 1.00e-04 2.00e-03
Smp_089570.1 SmLINC01431-IBu 0.88 1.30e-05 3.00e-04
Smp_089570.1 SmLINC01538-IBu 0.83 1.00e-04 1.60e-03
Smp_089570.1 SmLINC01569-IBu 0.84 7.69e-05 1.10e-03
Smp_089570.1 SmLINC01733-IBu 0.86 3.72e-05 6.00e-04
Smp_089570.1 SmLINC02084-IBu 0.80 2.00e-04 2.90e-03
Smp_089570.1 SmLINC02394-IBu 0.81 1.00e-04 2.20e-03
Smp_089570.1 SmLINC04421-IBu 0.83 9.92e-05 1.40e-03
Smp_089570.1 SmLINC04423-IBu 0.85 5.38e-05 9.00e-04
Smp_089570.1 SmLINC04478-IBu 0.88 1.17e-05 2.00e-04
Smp_089570.1 SmLINC04521-IBu 0.89 5.98e-06 1.00e-04
Smp_089570.1 SmLINC05147-IBu 0.81 2.00e-04 2.50e-03
Smp_089570.1 SmLINC05289-IBu 0.81 1.00e-04 2.20e-03
Smp_089570.1 SmLINC06024-IBu 0.84 7.06e-05 1.00e-03
Smp_089570.1 SmLINC06145-IBu 0.91 1.94e-06 8.23e-05
Smp_089570.1 SmLINC06490-IBu -0.81 2.00e-04 2.40e-03

Correlation between Smp_089570.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_089570.1 0 0.84 -1.91 2.60 3.28
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_159070.2 0 -0.62 -11.03 1.85 1.97

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_089570.1 Smp_024180.1 0.92 9.22e-07 5.04e-05
Smp_089570.1 Smp_024180.2 0.92 6.91e-07 4.11e-05
Smp_089570.1 Smp_033260.1 0.90 3.73e-06 1.00e-04
Smp_089570.1 Smp_040970.2 0.91 1.59e-06 7.41e-05
Smp_089570.1 Smp_079420.1 0.91 1.58e-06 7.38e-05
Smp_089570.1 Smp_094050.1 0.90 3.42e-06 1.00e-04
Smp_089570.1 Smp_159070.2 0.93 2.26e-07 1.89e-05