Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_089290.1 Data

Correlation between Smp_089290.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_089290.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_089290.1 0 -0.57 1.49 5.98 6.95

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_089290.1 SmLINC00001-IBu 0.89 6.21e-06 1.00e-04
Smp_089290.1 SmLINC00004-IBu 0.93 4.01e-07 2.69e-05
Smp_089290.1 SmLINC00266-IBu 0.80 3.00e-04 3.30e-03
Smp_089290.1 SmLINC00294-IBu -0.80 2.00e-04 3.10e-03
Smp_089290.1 SmLINC00369-IBu 0.86 2.94e-05 5.00e-04
Smp_089290.1 SmLINC00376-IBu 0.81 1.00e-04 2.20e-03
Smp_089290.1 SmLINC00525-IBu 0.95 1.71e-08 3.07e-06
Smp_089290.1 SmLINC00548-IBu 0.80 2.00e-04 3.00e-03
Smp_089290.1 SmLINC00633-IBu 0.88 1.50e-05 3.00e-04
Smp_089290.1 SmLINC01084-IBu 0.94 9.95e-08 1.02e-05
Smp_089290.1 SmLINC01122-IBu 0.85 4.34e-05 7.00e-04
Smp_089290.1 SmLINC01431-IBu 0.90 3.60e-06 1.00e-04
Smp_089290.1 SmLINC01432-IBu 0.93 2.42e-07 1.89e-05
Smp_089290.1 SmLINC01435-IBu 0.80 3.00e-04 3.20e-03
Smp_089290.1 SmLINC01520-IBu 0.86 2.73e-05 5.00e-04
Smp_089290.1 SmLINC01569-IBu 0.85 4.03e-05 7.00e-04
Smp_089290.1 SmLINC02029-IBu 0.87 1.72e-05 3.00e-04
Smp_089290.1 SmLINC02084-IBu 0.89 6.54e-06 1.00e-04
Smp_089290.1 SmLINC02255-IBu -0.81 2.00e-04 2.40e-03
Smp_089290.1 SmLINC02376-IBu 0.81 2.00e-04 2.40e-03
Smp_089290.1 SmLINC02394-IBu 0.84 7.96e-05 1.10e-03
Smp_089290.1 SmLINC02539-IBu 0.89 6.07e-06 1.00e-04
Smp_089290.1 SmLINC02540-IBu 0.82 1.00e-04 1.90e-03
Smp_089290.1 SmLINC02545-IBu 0.93 2.98e-07 2.19e-05
Smp_089290.1 SmLINC02546-IBu 0.83 9.96e-05 1.40e-03
Smp_089290.1 SmLINC02577-IBu 0.85 5.00e-05 8.00e-04
Smp_089290.1 SmLINC02630-IBu -0.80 2.00e-04 3.00e-03
Smp_089290.1 SmLINC03108-IBu 0.80 3.00e-04 3.30e-03
Smp_089290.1 SmLINC03658-IBu 0.83 9.40e-05 1.30e-03
Smp_089290.1 SmLINC03849-IBu -0.83 1.00e-04 1.40e-03
Smp_089290.1 SmLINC03927-IBu 0.94 1.07e-07 1.07e-05
Smp_089290.1 SmLINC04235-IBu 0.85 4.93e-05 8.00e-04
Smp_089290.1 SmLINC04421-IBu 0.98 3.17e-12 1.21e-08
Smp_089290.1 SmLINC04423-IBu 0.92 7.57e-07 4.21e-05
Smp_089290.1 SmLINC04478-IBu 0.89 7.42e-06 2.00e-04
Smp_089290.1 SmLINC04521-IBu 0.84 6.65e-05 1.00e-03
Smp_089290.1 SmLINC04896-IBu 0.84 8.11e-05 1.20e-03
Smp_089290.1 SmLINC05147-IBu 0.84 6.46e-05 1.00e-03
Smp_089290.1 SmLINC05274-IBu -0.82 1.00e-04 1.90e-03
Smp_089290.1 SmLINC05284-IBu -0.80 3.00e-04 3.20e-03
Smp_089290.1 SmLINC05289-IBu 0.92 9.69e-07 5.02e-05
Smp_089290.1 SmLINC05404-IBu 0.82 1.00e-04 2.10e-03
Smp_089290.1 SmLINC05604-IBu 0.98 1.16e-11 2.73e-08
Smp_089290.1 SmLINC05684-IBu 0.81 2.00e-04 2.40e-03
Smp_089290.1 SmLINC06024-IBu 0.94 1.03e-07 1.05e-05
Smp_089290.1 SmLINC06145-IBu 0.81 2.00e-04 2.40e-03
Smp_089290.1 SmLINC06415-IBu 0.84 8.35e-05 1.20e-03
Smp_089290.1 SmLINC06490-IBu -0.82 1.00e-04 2.00e-03

Correlation between Smp_089290.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_089290.1 0 -0.57 1.49 5.98 6.95
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_203090.1 0 0.00 0.00 10.35 10.67

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 Smp_089290.1 0.96 6.77e-09 1.76e-06
Smp_089290.1 Smp_037720.1 0.91 1.92e-06 8.46e-05
Smp_050350.3 Smp_089290.1 0.95 1.55e-08 3.06e-06
Smp_089290.1 Smp_052280.2 0.91 1.25e-06 6.25e-05
Smp_089290.1 Smp_056460.1 0.96 7.18e-09 1.83e-06
Smp_089290.1 Smp_079420.1 0.92 7.68e-07 4.43e-05
Smp_089290.1 Smp_094050.1 0.92 1.13e-06 5.82e-05
Smp_089290.1 Smp_095410.1 0.91 1.89e-06 8.35e-05
Smp_089290.1 Smp_137000.2 0.92 6.61e-07 3.99e-05
Smp_089290.1 Smp_137810.1 0.91 1.52e-06 7.18e-05
Smp_089290.1 Smp_140720.1 0.94 1.61e-07 1.50e-05
Smp_089290.1 Smp_155570.1 0.92 6.61e-07 3.99e-05
Smp_089290.1 Smp_156930.1 0.94 1.32e-07 1.30e-05
Smp_089290.1 Smp_172960.1 0.93 4.53e-07 3.07e-05
Smp_089290.1 Smp_192780.1 0.94 7.43e-08 8.84e-06
Smp_194860.1 Smp_089290.1 0.94 1.67e-07 1.54e-05
Smp_089290.1 Smp_201910.1 0.90 3.17e-06 1.00e-04
Smp_089290.1 Smp_203030.1 0.90 3.86e-06 1.00e-04
Smp_203090.1 Smp_089290.1 0.92 8.92e-07 4.92e-05