Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_089270.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_089270.1 0 3.49 0.00 4.50 10.21

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_089270.1 SmLINC02029-IBu 0.85 5.51e-05 9.00e-04
Smp_089270.1 SmLINC02786-IBu 0.88 1.17e-05 2.00e-04
Smp_089270.1 SmLINC03658-IBu 0.85 4.86e-05 8.00e-04
Smp_089270.1 SmLINC04235-IBu 0.81 1.00e-04 2.30e-03
Smp_089270.1 SmLINC04896-IBu 0.96 7.03e-09 1.69e-06
Smp_089270.1 SmLINC05404-IBu 0.89 5.55e-06 1.00e-04
Smp_089270.1 SmLINC05684-IBu 0.80 2.00e-04 2.80e-03
Smp_089270.1 SmLINC06239-IBu 0.82 1.00e-04 1.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00044-IBu 0 0.32 -0.24 0.16 8.57
SmLINC00394-IBu 0 -0.50 -1.27 2.08 7.78
SmLINC00714-IBu 0 0.00 5.32 7.47 9.97
SmLINC00890-IBu 0 0.00 0.00 3.45 7.41
SmLINC02117-IBu 0 -4.43 -0.46 1.87 4.79
SmLINC02333-IBu 0 0.43 -0.92 -2.19 4.81
SmLINC02527-IBu 0 0.00 0.00 2.95 7.34
SmLINC03685-IBu 0 5.50 2.12 3.49 9.24
SmLINC04088-IBu 0 -1.76 -2.21 1.40 5.36
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05996-IBu 0 0.00 3.21 2.03 9.08
SmLINC06000-IBu 0 1.88 0.00 3.45 9.47
SmLINC06801-IBu 0 -0.54 0.90 -0.25 5.25
Smp_031020.1 0 2.29 0.46 -0.25 5.32
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_056350.1 0 0.33 1.23 3.20 6.26
Smp_074710.1 0 -1.43 -2.06 -1.85 3.56
Smp_078720.1 0 1.88 0.00 3.32 8.87
Smp_083800.1 0 0.54 -0.03 3.09 8.86
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_141450.2 0 3.72 3.76 3.69 9.11
Smp_146810.1 0 0.41 0.21 2.10 6.19
Smp_148390.1 0 2.10 -2.34 1.95 8.66
Smp_149490.1 0 0.92 1.54 2.36 4.88
Smp_151560.1 0 2.28 2.16 3.43 5.85
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_152910.1 0 -3.44 -2.76 -1.50 2.86
Smp_154390.1 0 1.91 0.76 3.80 7.69
Smp_157690.1 0 0.42 0.58 4.07 8.62
Smp_158750.1 0 2.85 3.23 3.32 7.52
Smp_159920.1 0 1.39 1.19 3.96 6.50
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_166560.1 0 0.51 0.40 -0.15 4.81
Smp_166690.1 0 0.00 3.50 0.00 7.76
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_169090.1 0 -2.46 -3.97 -0.35 4.24
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_172980.1 0 -2.44 -2.43 2.35 5.58
Smp_174530.1 0 1.07 -3.50 -0.45 5.30
Smp_179600.1 0 -1.93 -1.93 -1.93 5.34
Smp_179710.1 0 0.24 -0.01 -0.87 4.04
Smp_200410.1 0 -1.15 -0.28 0.00 3.81
Smp_212430.1 0 1.72 5.10 5.71 7.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_089270.1 SmLINC00044-IBu 0.97 2.51e-10 2.10e-07
Smp_089270.1 SmLINC00394-IBu 0.90 4.38e-06 1.00e-04
Smp_089270.1 SmLINC00714-IBu 0.92 1.10e-06 5.73e-05
Smp_089270.1 SmLINC00890-IBu 0.93 2.57e-07 2.07e-05
Smp_089270.1 SmLINC02117-IBu 0.93 2.99e-07 2.30e-05
Smp_089270.1 SmLINC02333-IBu 0.93 2.26e-07 1.89e-05
Smp_089270.1 SmLINC02527-IBu 0.92 6.93e-07 4.12e-05
Smp_089270.1 SmLINC03685-IBu 0.96 1.11e-08 2.44e-06
Smp_089270.1 SmLINC04088-IBu 0.92 6.75e-07 4.05e-05
Smp_089270.1 SmLINC04896-IBu 0.96 7.03e-09 1.80e-06
Smp_089270.1 SmLINC05996-IBu 0.94 8.60e-08 9.76e-06
Smp_089270.1 SmLINC06000-IBu 0.90 2.53e-06 1.00e-04
Smp_089270.1 SmLINC06801-IBu 0.97 2.86e-10 2.28e-07
Smp_089270.1 Smp_031020.1 0.92 7.79e-07 4.47e-05
Smp_089270.1 Smp_041540.1 0.91 1.44e-06 6.91e-05
Smp_089270.1 Smp_056350.1 0.91 1.99e-06 8.67e-05
Smp_089270.1 Smp_074710.1 0.94 1.29e-07 1.29e-05
Smp_089270.1 Smp_078720.1 0.92 6.38e-07 3.89e-05
Smp_089270.1 Smp_083800.1 0.92 9.99e-07 5.33e-05
Smp_089270.1 Smp_141450.2 0.93 3.24e-07 2.43e-05
Smp_089270.1 Smp_146810.1 0.92 5.30e-07 3.42e-05
Smp_089270.1 Smp_148390.1 0.92 7.43e-07 4.33e-05
Smp_089270.1 Smp_149490.1 0.93 2.02e-07 1.75e-05
Smp_089270.1 Smp_151560.1 0.91 1.28e-06 6.35e-05
Smp_152150.1 Smp_089270.1 0.95 4.79e-08 6.56e-06
Smp_089270.1 Smp_152910.1 0.94 1.20e-07 1.23e-05
Smp_089270.1 Smp_154390.1 0.92 9.02e-07 4.96e-05
Smp_089270.1 Smp_157690.1 0.90 3.39e-06 1.00e-04
Smp_089270.1 Smp_158750.1 0.91 1.94e-06 8.52e-05
Smp_089270.1 Smp_159920.1 0.90 2.96e-06 1.00e-04
Smp_089270.1 Smp_164400.1 0.92 6.49e-07 3.94e-05
Smp_089270.1 Smp_166560.1 0.93 3.14e-07 2.38e-05
Smp_166690.1 Smp_089270.1 0.94 1.35e-07 1.33e-05
Smp_089270.1 Smp_167830.1 0.99 5.25e-20 4.32e-14
Smp_169090.1 Smp_089270.1 0.94 1.80e-07 1.62e-05
Smp_089270.1 Smp_170840.1 0.99 4.07e-17 9.57e-12
Smp_172980.1 Smp_089270.1 0.91 1.45e-06 6.95e-05
Smp_089270.1 Smp_174530.1 0.92 1.00e-06 5.34e-05
Smp_089270.1 Smp_179600.1 0.92 5.23e-07 3.39e-05
Smp_089270.1 Smp_179710.1 0.96 7.59e-09 1.90e-06
Smp_089270.1 Smp_200410.1 0.96 4.20e-09 1.29e-06
Smp_089270.1 Smp_212430.1 0.91 1.78e-06 8.01e-05