Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_088360.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_088360.1 0 -1.38 -2.65 2.33 2.20

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_088360.1 SmLINC02026-IBu -0.70 3.50e-03 1.61e-02
Smp_088360.1 SmLINC04271-IBu -0.58 2.27e-02 6.29e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_088360.1 0 -1.38 -2.65 2.33 2.20

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_088360.1 SmLINC00171-IBu 0.91 2.17e-06 8.91e-05
Smp_088360.1 SmLINC00266-IBu 0.81 2.00e-04 2.50e-03
Smp_088360.1 SmLINC00369-IBu 0.88 1.29e-05 3.00e-04
Smp_088360.1 SmLINC00376-IBu 0.89 7.49e-06 2.00e-04
Smp_088360.1 SmLINC00477-IBu 0.89 5.68e-06 1.00e-04
Smp_088360.1 SmLINC00484-IBu 0.84 8.27e-05 1.20e-03
Smp_088360.1 SmLINC00548-IBu 0.88 1.17e-05 2.00e-04
Smp_088360.1 SmLINC00633-IBu 0.88 1.41e-05 3.00e-04
Smp_088360.1 SmLINC01066-IBu 0.92 7.85e-07 4.32e-05
Smp_088360.1 SmLINC01122-IBu 0.83 1.00e-04 1.60e-03
Smp_088360.1 SmLINC01139-IBu 0.85 4.00e-05 7.00e-04
Smp_088360.1 SmLINC01171-IBu 0.87 1.75e-05 3.00e-04
Smp_088360.1 SmLINC01431-IBu 0.85 4.74e-05 8.00e-04
Smp_088360.1 SmLINC01433-IBu 0.92 9.45e-07 4.93e-05
Smp_088360.1 SmLINC01435-IBu 0.90 2.71e-06 1.00e-04
Smp_088360.1 SmLINC01538-IBu 0.86 3.05e-05 5.00e-04
Smp_088360.1 SmLINC01569-IBu 0.84 8.74e-05 1.20e-03
Smp_088360.1 SmLINC01733-IBu 0.80 2.00e-04 2.80e-03
Smp_088360.1 SmLINC01746-IBu 0.87 2.44e-05 5.00e-04
Smp_088360.1 SmLINC01822-IBu 0.87 1.80e-05 4.00e-04
Smp_088360.1 SmLINC02084-IBu 0.90 4.17e-06 1.00e-04
Smp_088360.1 SmLINC02546-IBu 0.85 4.00e-05 7.00e-04
Smp_088360.1 SmLINC02581-IBu 0.82 1.00e-04 2.10e-03
Smp_088360.1 SmLINC03108-IBu 0.92 9.14e-07 4.81e-05
Smp_088360.1 SmLINC03236-IBu 0.91 2.22e-06 9.06e-05
Smp_088360.1 SmLINC03309-IBu 0.88 9.28e-06 2.00e-04
Smp_088360.1 SmLINC03542-IBu 0.89 7.94e-06 2.00e-04
Smp_088360.1 SmLINC03693-IBu 0.95 3.40e-08 4.90e-06
Smp_088360.1 SmLINC03927-IBu 0.83 9.72e-05 1.30e-03
Smp_088360.1 SmLINC04054-IBu 0.84 6.39e-05 1.00e-03
Smp_088360.1 SmLINC04345-IBu 0.82 1.00e-04 1.90e-03
Smp_088360.1 SmLINC04432-IBu 0.81 2.00e-04 2.50e-03
Smp_088360.1 SmLINC04475-IBu 0.85 5.78e-05 9.00e-04
Smp_088360.1 SmLINC04521-IBu 0.83 1.00e-04 1.40e-03
Smp_088360.1 SmLINC04663-IBu 0.85 4.77e-05 8.00e-04
Smp_088360.1 SmLINC04684-IBu 0.92 7.77e-07 4.29e-05
Smp_088360.1 SmLINC04759-IBu 0.80 3.00e-04 3.20e-03
Smp_088360.1 SmLINC05009-IBu 0.89 8.55e-06 2.00e-04
Smp_088360.1 SmLINC05147-IBu 0.87 1.69e-05 3.00e-04
Smp_088360.1 SmLINC05171-IBu 0.87 1.86e-05 4.00e-04
Smp_088360.1 SmLINC05258-IBu 0.93 3.77e-07 2.58e-05
Smp_088360.1 SmLINC06007-IBu 0.86 3.26e-05 6.00e-04
Smp_088360.1 SmLINC06010-IBu 0.82 1.00e-04 2.10e-03
Smp_088360.1 SmLINC06221-IBu 0.93 1.96e-07 1.63e-05
Smp_088360.1 SmLINC06418-IBu 0.86 2.88e-05 5.00e-04
Smp_088360.1 SmLINC06444-IBu 0.84 6.54e-05 1.00e-03
Smp_088360.1 SmLINC06449-IBu 0.82 1.00e-04 1.80e-03
Smp_088360.1 SmLINC06536-IBu 0.88 1.45e-05 3.00e-04
Smp_088360.1 SmLINC06538-IBu 0.80 3.00e-04 3.30e-03
Smp_088360.1 SmLINC06543-IBu 0.93 2.50e-07 1.93e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_088360.1 0 -1.38 -2.65 2.33 2.20
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 Smp_088360.1 0.93 4.63e-07 3.11e-05
Smp_058660.1 Smp_088360.1 0.93 3.63e-07 2.63e-05
Smp_088360.1 Smp_082580.1 0.90 3.44e-06 1.00e-04
Smp_083990.2 Smp_088360.1 0.93 3.06e-07 2.33e-05
Smp_088360.1 Smp_123200.1 0.90 4.81e-06 1.00e-04
Smp_088360.1 Smp_125210.1 0.90 4.27e-06 1.00e-04
Smp_137320.1 Smp_088360.1 0.92 5.93e-07 3.70e-05
Smp_141680.1 Smp_088360.1 0.92 7.71e-07 4.44e-05
Smp_088360.1 Smp_145400.1 0.91 1.47e-06 7.01e-05
Smp_151120.1 Smp_088360.1 0.92 7.06e-07 4.18e-05
Smp_170280.1 Smp_088360.1 0.92 1.16e-06 5.95e-05
Smp_172480.1 Smp_088360.1 0.90 4.61e-06 1.00e-04
Smp_088360.1 Smp_205270.1 0.91 2.41e-06 9.93e-05