Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_087250.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_087250.1 0 -2.06 -5.90 -3.94 -5.02

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_087250.1 SmLINC02888-IBu 0.82 1.00e-04 2.00e-03
Smp_087250.1 SmLINC04957-IBu 0.89 6.00e-06 1.00e-04
Smp_087250.1 SmLINC05989-IBu 0.85 5.01e-05 8.00e-04
Smp_087250.1 SmLINC06128-IBu 0.86 2.56e-05 5.00e-04
Smp_087250.1 SmLINC06890-IBu 0.92 8.73e-07 4.66e-05
Smp_087250.1 SmLINC06903-IBu 0.96 1.01e-08 2.15e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_087250.1 0 -2.06 -5.90 -3.94 -5.02
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032980.1 Smp_087250.1 0.90 3.41e-06 1.00e-04
Smp_055770.1 Smp_087250.1 0.91 1.63e-06 7.54e-05
Smp_087250.1 Smp_079970.1 0.94 8.31e-08 9.53e-06
Smp_087250.1 Smp_152780.1 0.92 7.54e-07 4.37e-05
Smp_206200.1 Smp_087250.1 0.94 7.11e-08 8.57e-06