Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_086600.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04387-IBu 0 -2.15 -6.76 0.33 0.40
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_086600.1 SmLINC00001-IBu -0.82 1.00e-04 1.80e-03
Smp_086600.1 SmLINC00004-IBu -0.85 4.71e-05 8.00e-04
Smp_086600.1 SmLINC00294-IBu 0.91 2.42e-06 9.62e-05
Smp_086600.1 SmLINC00369-IBu -0.85 5.86e-05 9.00e-04
Smp_086600.1 SmLINC00376-IBu -0.82 1.00e-04 1.70e-03
Smp_086600.1 SmLINC00525-IBu -0.89 6.64e-06 1.00e-04
Smp_086600.1 SmLINC00633-IBu -0.80 3.00e-04 3.10e-03
Smp_086600.1 SmLINC01084-IBu -0.90 4.53e-06 1.00e-04
Smp_086600.1 SmLINC01122-IBu -0.81 2.00e-04 2.30e-03
Smp_086600.1 SmLINC01431-IBu -0.87 1.94e-05 4.00e-04
Smp_086600.1 SmLINC01569-IBu -0.80 2.00e-04 2.90e-03
Smp_086600.1 SmLINC01637-IBu 0.85 4.69e-05 8.00e-04
Smp_086600.1 SmLINC02084-IBu -0.85 4.67e-05 8.00e-04
Smp_086600.1 SmLINC02394-IBu -0.81 2.00e-04 2.30e-03
Smp_086600.1 SmLINC02546-IBu -0.82 1.00e-04 1.90e-03
Smp_086600.1 SmLINC03395-IBu 0.82 1.00e-04 2.00e-03
Smp_086600.1 SmLINC03849-IBu 0.83 9.40e-05 1.30e-03
Smp_086600.1 SmLINC03927-IBu -0.81 2.00e-04 2.60e-03
Smp_086600.1 SmLINC04387-IBu -0.80 2.00e-04 2.80e-03
Smp_086600.1 SmLINC04421-IBu -0.86 2.60e-05 5.00e-04
Smp_086600.1 SmLINC04478-IBu -0.81 2.00e-04 2.60e-03
Smp_086600.1 SmLINC04521-IBu -0.82 1.00e-04 1.80e-03
Smp_086600.1 SmLINC05147-IBu -0.82 1.00e-04 2.10e-03
Smp_086600.1 SmLINC05284-IBu 0.80 2.00e-04 3.00e-03
Smp_086600.1 SmLINC05289-IBu -0.83 1.00e-04 1.60e-03
Smp_086600.1 SmLINC05604-IBu -0.84 7.70e-05 1.10e-03
Smp_086600.1 SmLINC05716-IBu 0.80 2.00e-04 2.80e-03
Smp_086600.1 SmLINC05720-IBu 0.80 2.00e-04 3.00e-03
Smp_086600.1 SmLINC06024-IBu -0.91 2.19e-06 8.97e-05
Smp_086600.1 SmLINC06490-IBu 0.88 9.25e-06 2.00e-04
Smp_086600.1 SmLINC06535-IBu 0.82 1.00e-04 2.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00378-IBu 0 0.65 -0.05 -4.62 -5.01
SmLINC00996-IBu 0 -0.50 -1.19 -3.39 -5.19
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01832-IBu 0 0.65 0.07 -2.99 -5.02
SmLINC02198-IBu 0 0.33 -0.29 -6.35 -11.80
SmLINC04259-IBu 0 0.67 0.50 -4.21 -5.86
SmLINC04395-IBu 0 0.52 -0.35 -3.28 -4.47
SmLINC04443-IBu 0 0.55 -0.36 -3.67 -9.70
SmLINC05969-IBu 0 -0.28 -0.93 -11.78 -11.78
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
Smp_022640.1 0 -0.91 -1.49 -5.58 -3.97
Smp_026820.1 0 -3.23 -3.72 0.76 1.23
Smp_028860.1 0 -0.07 -0.66 -4.17 -4.88
Smp_032580.1 0 -0.52 -0.98 -8.52 -6.88
Smp_039970.1 0 -1.25 -1.02 2.95 3.81
Smp_053830.1 0 -0.20 -1.48 -4.87 -3.36
Smp_055900.1 0 -8.50 -8.50 3.36 4.13
Smp_062720.1 0 -0.73 -0.47 -6.25 -5.83
Smp_068920.3 0 -0.20 -1.33 -4.27 -3.53
Smp_071640.1 0 -0.48 -1.03 -6.28 -5.01
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_109340.1 0 1.47 0.69 -10.22 -10.22
Smp_120330.1 0 -0.78 -1.75 -6.70 -8.97
Smp_122830.1 0 -0.22 -0.24 -3.98 -3.99
Smp_126850.1 0 -0.32 -0.59 -8.40 -9.05
Smp_141020.1 0 -0.45 -0.94 -9.20 -5.95
Smp_159730.2 0 -0.26 -0.69 -4.33 -4.68
Smp_177900.1 0 -0.46 -0.44 -3.24 -4.66
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_201240.1 0 0.33 1.35 -3.56 -3.77
Smp_201280.1 0 0.50 0.74 -4.14 -8.03
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79
Smp_900100.1 0 -4.19 -2.73 1.96 2.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_086600.1 SmLINC00294-IBu 0.91 2.42e-06 9.95e-05
Smp_086600.1 SmLINC00378-IBu 0.91 1.69e-06 7.74e-05
Smp_086600.1 SmLINC00996-IBu 0.92 7.93e-07 4.53e-05
Smp_086600.1 SmLINC01084-IBu -0.90 4.53e-06 1.00e-04
Smp_086600.1 SmLINC01832-IBu 0.92 5.74e-07 3.61e-05
Smp_086600.1 SmLINC02198-IBu 0.90 2.61e-06 1.00e-04
Smp_086600.1 SmLINC04259-IBu 0.91 1.50e-06 7.11e-05
Smp_086600.1 SmLINC04395-IBu 0.90 3.35e-06 1.00e-04
Smp_086600.1 SmLINC04443-IBu 0.94 1.54e-07 1.45e-05
Smp_086600.1 SmLINC05969-IBu 0.90 3.03e-06 1.00e-04
Smp_086600.1 SmLINC06024-IBu -0.91 2.19e-06 9.29e-05
Smp_022640.1 Smp_086600.1 0.94 1.31e-07 1.30e-05
Smp_086600.1 Smp_026820.1 -0.91 2.31e-06 9.63e-05
Smp_028860.1 Smp_086600.1 0.91 2.38e-06 9.85e-05
Smp_032580.1 Smp_086600.1 0.91 1.96e-06 8.58e-05
Smp_086600.1 Smp_039970.1 -0.90 4.67e-06 1.00e-04
Smp_086600.1 Smp_053830.1 0.94 1.14e-07 1.19e-05
Smp_055900.1 Smp_086600.1 -0.90 2.54e-06 1.00e-04
Smp_062720.1 Smp_086600.1 0.92 7.40e-07 4.32e-05
Smp_068920.3 Smp_086600.1 0.92 8.97e-07 4.94e-05
Smp_071640.1 Smp_086600.1 0.92 8.40e-07 4.72e-05
Smp_086600.1 Smp_109340.1 0.91 1.87e-06 8.31e-05
Smp_086600.1 Smp_120330.1 0.90 3.04e-06 1.00e-04
Smp_086600.1 Smp_122830.1 0.93 5.10e-07 3.33e-05
Smp_126850.1 Smp_086600.1 0.96 5.12e-09 1.46e-06
Smp_141020.1 Smp_086600.1 0.92 5.20e-07 3.38e-05
Smp_159730.2 Smp_086600.1 0.96 1.04e-08 2.34e-06
Smp_177900.1 Smp_086600.1 0.92 9.26e-07 5.05e-05
Smp_086600.1 Smp_184180.1 0.94 1.03e-07 1.11e-05
Smp_086600.1 Smp_201240.1 0.97 8.67e-10 4.65e-07
Smp_201280.1 Smp_086600.1 0.91 1.62e-06 7.51e-05
Smp_212510.1 Smp_086600.1 0.92 5.57e-07 3.54e-05
Smp_086600.1 Smp_900100.1 -0.90 3.63e-06 1.00e-04