Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_086220.1 Data

Correlation between Smp_086220.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_086220.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_086220.1 0 -2.36 0.42 2.51 3.05

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_086220.1 SmLINC00004-IBu 0.85 5.10e-05 8.00e-04
Smp_086220.1 SmLINC00369-IBu 0.84 8.67e-05 1.20e-03
Smp_086220.1 SmLINC00525-IBu 0.87 2.46e-05 5.00e-04
Smp_086220.1 SmLINC00548-IBu 0.86 3.49e-05 6.00e-04
Smp_086220.1 SmLINC00556-IBu -0.83 9.93e-05 1.40e-03
Smp_086220.1 SmLINC00633-IBu 0.86 2.72e-05 5.00e-04
Smp_086220.1 SmLINC01084-IBu 0.89 7.11e-06 2.00e-04
Smp_086220.1 SmLINC01122-IBu 0.85 4.08e-05 7.00e-04
Smp_086220.1 SmLINC01139-IBu 0.82 1.00e-04 2.00e-03
Smp_086220.1 SmLINC01431-IBu 0.90 3.31e-06 1.00e-04
Smp_086220.1 SmLINC01432-IBu 0.81 1.00e-04 2.20e-03
Smp_086220.1 SmLINC01538-IBu 0.88 1.12e-05 2.00e-04
Smp_086220.1 SmLINC01569-IBu 0.87 2.12e-05 4.00e-04
Smp_086220.1 SmLINC01733-IBu 0.90 4.05e-06 1.00e-04
Smp_086220.1 SmLINC01746-IBu 0.83 1.00e-04 1.40e-03
Smp_086220.1 SmLINC02084-IBu 0.83 1.00e-04 1.60e-03
Smp_086220.1 SmLINC02255-IBu -0.84 7.99e-05 1.20e-03
Smp_086220.1 SmLINC02546-IBu 0.86 3.92e-05 7.00e-04
Smp_086220.1 SmLINC02657-IBu -0.85 5.95e-05 9.00e-04
Smp_086220.1 SmLINC03309-IBu 0.85 4.31e-05 7.00e-04
Smp_086220.1 SmLINC03693-IBu 0.80 2.00e-04 2.80e-03
Smp_086220.1 SmLINC03849-IBu -0.89 8.77e-06 2.00e-04
Smp_086220.1 SmLINC03927-IBu 0.82 1.00e-04 1.80e-03
Smp_086220.1 SmLINC04421-IBu 0.86 3.78e-05 6.00e-04
Smp_086220.1 SmLINC04423-IBu 0.89 8.57e-06 2.00e-04
Smp_086220.1 SmLINC04432-IBu 0.85 5.73e-05 9.00e-04
Smp_086220.1 SmLINC04478-IBu 0.89 6.43e-06 1.00e-04
Smp_086220.1 SmLINC04521-IBu 0.88 1.31e-05 3.00e-04
Smp_086220.1 SmLINC05147-IBu 0.88 1.19e-05 3.00e-04
Smp_086220.1 SmLINC05274-IBu -0.80 2.00e-04 2.90e-03
Smp_086220.1 SmLINC05284-IBu -0.80 2.00e-04 2.80e-03
Smp_086220.1 SmLINC05604-IBu 0.82 1.00e-04 1.90e-03
Smp_086220.1 SmLINC06024-IBu 0.90 3.41e-06 1.00e-04
Smp_086220.1 SmLINC06415-IBu 0.89 8.10e-06 2.00e-04
Smp_086220.1 SmLINC06444-IBu 0.80 2.00e-04 2.80e-03
Smp_086220.1 SmLINC06449-IBu 0.83 9.73e-05 1.30e-03
Smp_086220.1 SmLINC06535-IBu -0.84 8.25e-05 1.20e-03

Correlation between Smp_086220.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_086220.1 0 -2.36 0.42 2.51 3.05
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_203090.1 0 0.00 0.00 10.35 10.67

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 Smp_086220.1 0.91 1.56e-06 7.31e-05
Smp_040970.2 Smp_086220.1 0.93 2.13e-07 1.82e-05
Smp_050350.3 Smp_086220.1 0.91 1.95e-06 8.55e-05
Smp_051210.3 Smp_086220.1 0.91 2.07e-06 8.93e-05
Smp_052280.2 Smp_086220.1 0.94 1.30e-07 1.30e-05
Smp_086220.1 Smp_079420.1 0.91 1.49e-06 7.07e-05
Smp_094050.1 Smp_086220.1 0.94 1.59e-07 1.48e-05
Smp_137000.2 Smp_086220.1 0.90 2.97e-06 1.00e-04
Smp_203090.1 Smp_086220.1 0.91 2.31e-06 9.64e-05