Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_085540.6 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_085540.6 0 0.57 1.84 6.09 4.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_085540.6 SmLINC00171-IBu 0.97 2.28e-09 8.04e-07
Smp_085540.6 SmLINC00477-IBu 0.96 6.27e-09 1.56e-06
Smp_085540.6 SmLINC00484-IBu 0.87 1.70e-05 3.00e-04
Smp_085540.6 SmLINC00548-IBu 0.87 2.09e-05 4.00e-04
Smp_085540.6 SmLINC00633-IBu 0.86 3.74e-05 6.00e-04
Smp_085540.6 SmLINC00769-IBu 0.83 1.00e-04 1.50e-03
Smp_085540.6 SmLINC01066-IBu 0.98 2.13e-11 4.00e-08
Smp_085540.6 SmLINC01139-IBu 0.89 5.45e-06 1.00e-04
Smp_085540.6 SmLINC01231-IBu 0.84 8.01e-05 1.20e-03
Smp_085540.6 SmLINC01433-IBu 0.98 1.04e-10 1.09e-07
Smp_085540.6 SmLINC01435-IBu 0.89 5.23e-06 1.00e-04
Smp_085540.6 SmLINC01538-IBu 0.86 3.24e-05 6.00e-04
Smp_085540.6 SmLINC01746-IBu 0.87 1.65e-05 3.00e-04
Smp_085540.6 SmLINC01822-IBu 0.97 1.83e-10 1.57e-07
Smp_085540.6 SmLINC02084-IBu 0.81 2.00e-04 2.50e-03
Smp_085540.6 SmLINC02546-IBu 0.81 2.00e-04 2.30e-03
Smp_085540.6 SmLINC02581-IBu 0.84 6.52e-05 1.00e-03
Smp_085540.6 SmLINC03108-IBu 0.87 2.34e-05 4.00e-04
Smp_085540.6 SmLINC03309-IBu 0.90 2.60e-06 1.00e-04
Smp_085540.6 SmLINC03542-IBu 0.93 3.27e-07 2.34e-05
Smp_085540.6 SmLINC03693-IBu 0.94 1.73e-07 1.50e-05
Smp_085540.6 SmLINC04054-IBu 0.93 3.94e-07 2.66e-05
Smp_085540.6 SmLINC04345-IBu 0.87 2.32e-05 4.00e-04
Smp_085540.6 SmLINC04432-IBu 0.82 1.00e-04 1.90e-03
Smp_085540.6 SmLINC04475-IBu 0.88 1.43e-05 3.00e-04
Smp_085540.6 SmLINC04663-IBu 0.89 7.98e-06 2.00e-04
Smp_085540.6 SmLINC04684-IBu 0.89 5.06e-06 1.00e-04
Smp_085540.6 SmLINC04747-IBu 0.87 2.45e-05 5.00e-04
Smp_085540.6 SmLINC04769-IBu 0.92 5.69e-07 3.45e-05
Smp_085540.6 SmLINC05009-IBu 0.95 2.71e-08 4.20e-06
Smp_085540.6 SmLINC05147-IBu 0.89 4.91e-06 1.00e-04
Smp_085540.6 SmLINC05171-IBu 0.97 1.11e-09 5.05e-07
Smp_085540.6 SmLINC05258-IBu 0.92 8.63e-07 4.62e-05
Smp_085540.6 SmLINC06007-IBu 0.97 3.13e-10 2.23e-07
Smp_085540.6 SmLINC06010-IBu 0.81 2.00e-04 2.30e-03
Smp_085540.6 SmLINC06221-IBu 0.94 7.62e-08 8.51e-06
Smp_085540.6 SmLINC06418-IBu 0.90 4.52e-06 1.00e-04
Smp_085540.6 SmLINC06444-IBu 0.83 9.63e-05 1.30e-03
Smp_085540.6 SmLINC06449-IBu 0.85 5.84e-05 9.00e-04
Smp_085540.6 SmLINC06536-IBu 0.97 7.70e-10 3.98e-07
Smp_085540.6 SmLINC06538-IBu 0.93 3.57e-07 2.48e-05
Smp_085540.6 SmLINC06543-IBu 0.94 1.41e-07 1.30e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_085540.6 0 0.57 1.84 6.09 4.63
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_200750.1 0 1.72 7.25 10.11 8.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 Smp_085540.6 0.92 6.69e-07 4.02e-05
Smp_045200.1 Smp_085540.6 0.93 3.44e-07 2.53e-05
Smp_058660.1 Smp_085540.6 0.91 1.24e-06 6.24e-05
Smp_068270.1 Smp_085540.6 0.92 9.56e-07 5.17e-05
Smp_082580.1 Smp_085540.6 0.92 6.48e-07 3.93e-05
Smp_085540.6 Smp_084270.1 0.96 7.51e-09 1.88e-06
Smp_105730.1 Smp_085540.6 0.92 7.67e-07 4.43e-05
Smp_118560.1 Smp_085540.6 0.93 3.88e-07 2.75e-05
Smp_123200.1 Smp_085540.6 0.97 1.45e-09 6.48e-07
Smp_125210.1 Smp_085540.6 0.95 5.59e-08 7.28e-06
Smp_128510.1 Smp_085540.6 0.94 1.19e-07 1.22e-05
Smp_134960.1 Smp_085540.6 0.95 1.59e-08 3.12e-06
Smp_137320.1 Smp_085540.6 0.94 1.43e-07 1.38e-05
Smp_141680.1 Smp_085540.6 0.92 6.78e-07 4.06e-05
Smp_160360.1 Smp_085540.6 0.90 3.83e-06 1.00e-04
Smp_163940.1 Smp_085540.6 0.95 1.57e-08 3.09e-06
Smp_170280.1 Smp_085540.6 0.95 3.33e-08 5.13e-06
Smp_085540.6 Smp_175020.1 0.95 2.97e-08 4.74e-06
Smp_194960.1 Smp_085540.6 0.93 2.10e-07 1.80e-05
Smp_085540.6 Smp_194970.1 0.94 1.63e-07 1.51e-05
Smp_194980.1 Smp_085540.6 0.94 1.89e-07 1.67e-05
Smp_197400.1 Smp_085540.6 0.90 2.60e-06 1.00e-04
Smp_200750.1 Smp_085540.6 0.97 4.79e-10 3.18e-07