Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_085290.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_085290.3 SmLINC02888-IBu 0.81 2.00e-04 2.70e-03
Smp_085290.3 SmLINC06128-IBu 0.86 3.49e-05 6.00e-04
Smp_085290.3 SmLINC06892-IBu 0.92 7.56e-07 4.20e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_007900.2 0 -2.04 -7.23 -2.98 -2.21
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_037020.1 0 -2.12 -8.24 -8.43 -8.13
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_099420.1 0 -2.79 -4.14 -4.04 -2.98
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_113710.1 0 -3.35 -5.78 -3.90 -2.82
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_149190.1 0 -3.08 -5.94 -9.47 -9.18
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_157310.1 0 -3.02 -6.78 -4.07 -5.91
Smp_168380.1 0 -1.89 -2.82 -9.66 -9.66
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_179460.1 0 -2.52 -7.07 -4.09 -3.97
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_190940.1 0 -3.61 -6.81 -3.30 -6.81
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_206130.1 0 -1.65 -4.00 -5.51 -5.79
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_085290.3 SmLINC06892-IBu 0.92 7.56e-07 4.38e-05
Smp_005860.1 Smp_085290.3 0.94 1.67e-07 1.54e-05
Smp_005860.3 Smp_085290.3 0.94 1.88e-07 1.67e-05
Smp_006560.1 Smp_085290.3 0.91 2.09e-06 8.97e-05
Smp_007900.2 Smp_085290.3 0.91 2.43e-06 1.00e-04
Smp_018880.1 Smp_085290.3 0.92 7.20e-07 4.24e-05
Smp_022430.1 Smp_085290.3 0.92 7.43e-07 4.33e-05
Smp_033610.1 Smp_085290.3 0.96 9.26e-09 2.16e-06
Smp_037020.1 Smp_085290.3 0.90 4.16e-06 1.00e-04
Smp_038560.6 Smp_085290.3 0.93 3.49e-07 2.56e-05
Smp_042160.1 Smp_085290.3 0.96 1.13e-08 2.47e-06
Smp_061580.1 Smp_085290.3 0.97 1.12e-09 5.49e-07
Smp_061870.1 Smp_085290.3 0.90 4.68e-06 1.00e-04
Smp_061940.1 Smp_085290.3 0.95 2.17e-08 3.84e-06
Smp_066010.1 Smp_085290.3 0.94 9.76e-08 1.06e-05
Smp_067980.1 Smp_085290.3 0.90 3.44e-06 1.00e-04
Smp_074570.1 Smp_085290.3 0.93 2.22e-07 1.87e-05
Smp_097750.1 Smp_085290.3 0.91 1.30e-06 6.44e-05
Smp_099420.1 Smp_085290.3 0.91 2.38e-06 9.85e-05
Smp_102670.1 Smp_085290.3 0.91 1.41e-06 6.80e-05
Smp_105610.1 Smp_085290.3 0.92 7.99e-07 4.55e-05
Smp_106390.1 Smp_085290.3 0.94 1.53e-07 1.45e-05
Smp_108050.1 Smp_085290.3 0.91 1.96e-06 8.60e-05
Smp_110400.3 Smp_085290.3 0.94 1.25e-07 1.26e-05
Smp_113710.1 Smp_085290.3 0.90 3.34e-06 1.00e-04
Smp_113760.1 Smp_085290.3 0.97 1.85e-10 1.72e-07
Smp_133310.1 Smp_085290.3 0.93 4.60e-07 3.10e-05
Smp_133770.1 Smp_085290.3 0.91 1.84e-06 8.20e-05
Smp_140680.2 Smp_085290.3 0.91 2.36e-06 9.79e-05
Smp_145710.1 Smp_085290.3 0.94 1.05e-07 1.12e-05
Smp_145810.2 Smp_085290.3 0.94 1.61e-07 1.50e-05
Smp_148800.1 Smp_085290.3 0.91 1.82e-06 8.14e-05
Smp_149190.1 Smp_085290.3 0.93 2.57e-07 2.07e-05
Smp_150690.2 Smp_085290.3 0.97 1.32e-09 6.11e-07
Smp_085290.3 Smp_153240.1 0.90 3.60e-06 1.00e-04
Smp_154020.1 Smp_085290.3 0.91 1.23e-06 6.19e-05
Smp_157310.1 Smp_085290.3 0.91 1.40e-06 6.77e-05
Smp_168380.1 Smp_085290.3 0.90 3.56e-06 1.00e-04
Smp_169190.1 Smp_085290.3 0.90 3.99e-06 1.00e-04
Smp_178240.1 Smp_085290.3 0.92 1.15e-06 5.90e-05
Smp_179460.1 Smp_085290.3 0.91 2.16e-06 9.20e-05
Smp_085290.3 Smp_182770.1 0.93 4.17e-07 2.89e-05
Smp_184460.1 Smp_085290.3 0.95 1.52e-08 3.02e-06
Smp_185180.1 Smp_085290.3 0.91 1.50e-06 7.10e-05
Smp_185220.1 Smp_085290.3 0.92 7.79e-07 4.47e-05
Smp_185360.1 Smp_085290.3 0.97 5.84e-10 3.61e-07
Smp_188900.1 Smp_085290.3 0.91 1.47e-06 7.01e-05
Smp_190320.1 Smp_085290.3 0.92 5.88e-07 3.68e-05
Smp_190940.1 Smp_085290.3 0.90 2.78e-06 1.00e-04
Smp_192880.1 Smp_085290.3 0.92 5.73e-07 3.61e-05
Smp_194040.1 Smp_085290.3 0.93 2.05e-07 1.77e-05
Smp_199840.1 Smp_085290.3 0.94 1.70e-07 1.55e-05
Smp_202140.1 Smp_085290.3 0.91 1.69e-06 7.75e-05
Smp_202700.1 Smp_085290.3 0.97 1.48e-09 6.56e-07
Smp_205900.1 Smp_085290.3 0.90 4.75e-06 1.00e-04
Smp_206130.1 Smp_085290.3 0.91 2.18e-06 9.25e-05
Smp_206150.1 Smp_085290.3 0.94 1.92e-07 1.69e-05