Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_085110.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
Smp_085110.3 0 8.59 12.67 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_085110.3 SmLINC02026-IBu 0.80 3.00e-04 3.30e-03
Smp_085110.3 SmLINC04430-IBu 0.91 1.50e-06 6.87e-05
Smp_085110.3 SmLINC05559-IBu 0.81 1.00e-04 2.20e-03
Smp_085110.3 SmLINC06700-IBu 0.87 1.64e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00192-IBu 0 0.61 2.35 -8.28 -4.07
SmLINC01002-IBu 0 3.82 5.68 -2.26 -2.26
SmLINC01824-IBu 0 0.00 5.41 4.53 2.63
SmLINC04077-IBu 0 1.23 3.96 -1.93 -1.93
SmLINC04219-IBu 0 -1.93 4.04 -1.93 -1.93
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC06818-IBu 0 -0.47 6.07 -3.17 -3.17
SmLINC07017-IBu 0 2.51 4.73 -1.06 -1.03
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_017020.1 0 0.08 0.95 -6.58 -6.58
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_059170.1 0 0.39 6.13 4.57 -4.44
Smp_062420.1 0 1.52 4.05 -0.25 -0.83
Smp_062420.4 0 -0.89 2.10 -11.39 -11.39
Smp_076650.1 0 0.65 2.86 -0.34 -4.53
Smp_078010.1 0 -2.61 3.58 -0.01 -6.74
Smp_084940.1 0 -2.11 1.80 -3.80 -4.78
Smp_085110.3 0 8.59 12.67 0.00 0.00
Smp_093790.1 0 2.46 6.22 -0.90 5.51
Smp_103830.1 0 0.33 7.02 0.00 0.00
Smp_169680.1 0 3.42 6.47 5.96 4.77
Smp_179270.2 0 8.48 9.70 4.70 3.75
Smp_189380.1 0 1.72 6.15 2.10 5.31
Smp_189980.1 0 1.62 9.93 -1.10 -1.10
Smp_202120.1 0 -0.66 7.33 6.40 5.50
Smp_206270.1 0 1.06 4.27 1.21 -0.69

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_085110.3 SmLINC00192-IBu 0.91 1.45e-06 6.95e-05
Smp_085110.3 SmLINC01002-IBu 0.90 3.17e-06 1.00e-04
Smp_085110.3 SmLINC01824-IBu 0.90 2.67e-06 1.00e-04
Smp_085110.3 SmLINC04077-IBu 0.97 5.06e-10 3.29e-07
Smp_085110.3 SmLINC04219-IBu 0.90 4.59e-06 1.00e-04
Smp_085110.3 SmLINC04430-IBu 0.91 1.50e-06 7.13e-05
Smp_085110.3 SmLINC06818-IBu 0.98 5.27e-12 1.85e-08
Smp_085110.3 SmLINC07017-IBu 0.97 2.29e-09 8.70e-07
Smp_010140.2 Smp_085110.3 0.90 2.54e-06 1.00e-04
Smp_085110.3 Smp_017020.1 0.93 2.77e-07 2.18e-05
Smp_042090.3 Smp_085110.3 0.97 5.56e-10 3.49e-07
Smp_059170.1 Smp_085110.3 0.93 3.52e-07 2.57e-05
Smp_085110.3 Smp_062420.1 0.97 6.48e-10 3.85e-07
Smp_085110.3 Smp_062420.4 0.97 3.02e-10 2.37e-07
Smp_085110.3 Smp_076650.1 0.93 2.39e-07 1.97e-05
Smp_085110.3 Smp_078010.1 0.93 2.80e-07 2.19e-05
Smp_085110.3 Smp_084940.1 0.95 6.03e-08 7.66e-06
Smp_085110.3 Smp_093790.1 0.90 4.18e-06 1.00e-04
Smp_103830.1 Smp_085110.3 0.95 3.35e-08 5.14e-06
Smp_169680.1 Smp_085110.3 0.92 1.04e-06 5.52e-05
Smp_085110.3 Smp_179270.2 0.90 3.70e-06 1.00e-04
Smp_085110.3 Smp_189380.1 0.92 9.45e-07 5.12e-05
Smp_085110.3 Smp_189980.1 0.93 3.85e-07 2.74e-05
Smp_202120.1 Smp_085110.3 0.93 3.50e-07 2.57e-05
Smp_085110.3 Smp_206270.1 0.95 2.49e-08 4.21e-06