Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_084400.4 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_084400.4 0 -2.64 -4.06 -5.30 -7.16

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_084400.4 SmLINC02888-IBu 0.82 1.00e-04 1.80e-03
Smp_084400.4 SmLINC06892-IBu 0.88 9.01e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_084400.4 0 -2.64 -4.06 -5.30 -7.16
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_084400.4 Smp_009650.2 0.90 3.70e-06 1.00e-04
Smp_084400.4 Smp_032990.1 0.92 1.01e-06 5.39e-05
Smp_066010.1 Smp_084400.4 0.90 2.80e-06 1.00e-04
Smp_183020.1 Smp_084400.4 0.94 1.86e-07 1.65e-05
Smp_084400.4 Smp_183020.6 0.94 1.86e-07 1.65e-05
Smp_084400.4 Smp_184460.1 0.90 4.11e-06 1.00e-04
Smp_206150.1 Smp_084400.4 0.90 3.82e-06 1.00e-04