Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_084210.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_084210.1 SmLINC00026-IBu 0.85 4.79e-05 8.00e-04
Smp_084210.1 SmLINC00787-IBu 0.84 7.37e-05 1.10e-03
Smp_084210.1 SmLINC01230-IBu 0.84 7.46e-05 1.10e-03
Smp_084210.1 SmLINC01429-IBu 0.94 6.35e-08 7.51e-06
Smp_084210.1 SmLINC01979-IBu 0.93 2.61e-07 1.99e-05
Smp_084210.1 SmLINC02646-IBu 0.81 2.00e-04 2.40e-03
Smp_084210.1 SmLINC03111-IBu 0.95 1.84e-08 3.23e-06
Smp_084210.1 SmLINC03116-IBu 0.91 1.20e-06 5.86e-05
Smp_084210.1 SmLINC03395-IBu 0.87 1.58e-05 3.00e-04
Smp_084210.1 SmLINC03443-IBu 0.95 2.71e-08 4.20e-06
Smp_084210.1 SmLINC03486-IBu 0.84 6.53e-05 1.00e-03
Smp_084210.1 SmLINC04074-IBu 0.89 8.74e-06 2.00e-04
Smp_084210.1 SmLINC04129-IBu 0.86 2.75e-05 5.00e-04
Smp_084210.1 SmLINC04144-IBu 0.88 1.38e-05 3.00e-04
Smp_084210.1 SmLINC04271-IBu 0.83 1.00e-04 1.50e-03
Smp_084210.1 SmLINC05178-IBu 0.80 2.00e-04 2.80e-03
Smp_084210.1 SmLINC05840-IBu 0.86 3.82e-05 7.00e-04
Smp_084210.1 SmLINC05887-IBu 0.81 2.00e-04 2.60e-03
Smp_084210.1 SmLINC06138-IBu 0.82 1.00e-04 2.00e-03
Smp_084210.1 SmLINC06436-IBu 0.88 1.20e-05 3.00e-04
Smp_084210.1 SmLINC06646-IBu 0.85 4.26e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_193990.1 0 2.54 2.04 -11.18 -11.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176230.2 Smp_084210.1 0.93 3.76e-07 2.69e-05
Smp_193700.1 Smp_084210.1 0.93 4.09e-07 2.86e-05
Smp_193990.1 Smp_084210.1 0.90 2.70e-06 1.00e-04