Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_083990.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_083990.2 0 9.99 8.37 12.41 12.60

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083990.2 SmLINC00369-IBu 0.88 1.10e-05 2.00e-04
Smp_083990.2 SmLINC00376-IBu 0.95 3.50e-08 5.00e-06
Smp_083990.2 SmLINC00525-IBu 0.80 3.00e-04 3.30e-03
Smp_083990.2 SmLINC00548-IBu 0.84 8.57e-05 1.20e-03
Smp_083990.2 SmLINC00633-IBu 0.84 8.08e-05 1.20e-03
Smp_083990.2 SmLINC01066-IBu 0.80 2.00e-04 3.00e-03
Smp_083990.2 SmLINC01084-IBu 0.83 1.00e-04 1.40e-03
Smp_083990.2 SmLINC01122-IBu 0.85 4.05e-05 7.00e-04
Smp_083990.2 SmLINC01171-IBu 0.91 1.78e-06 7.76e-05
Smp_083990.2 SmLINC01431-IBu 0.86 2.90e-05 5.00e-04
Smp_083990.2 SmLINC01433-IBu 0.80 3.00e-04 3.20e-03
Smp_083990.2 SmLINC01435-IBu 0.84 7.63e-05 1.10e-03
Smp_083990.2 SmLINC01538-IBu 0.83 9.08e-05 1.30e-03
Smp_083990.2 SmLINC01569-IBu 0.85 5.29e-05 8.00e-04
Smp_083990.2 SmLINC01733-IBu 0.83 9.73e-05 1.30e-03
Smp_083990.2 SmLINC01746-IBu 0.81 2.00e-04 2.60e-03
Smp_083990.2 SmLINC02084-IBu 0.87 1.55e-05 3.00e-04
Smp_083990.2 SmLINC02255-IBu -0.81 2.00e-04 2.30e-03
Smp_083990.2 SmLINC02546-IBu 0.83 1.00e-04 1.60e-03
Smp_083990.2 SmLINC02630-IBu -0.84 7.85e-05 1.10e-03
Smp_083990.2 SmLINC03108-IBu 0.84 7.80e-05 1.10e-03
Smp_083990.2 SmLINC03236-IBu 0.95 2.98e-08 4.48e-06
Smp_083990.2 SmLINC03309-IBu 0.83 1.00e-04 1.60e-03
Smp_083990.2 SmLINC03693-IBu 0.89 6.51e-06 1.00e-04
Smp_083990.2 SmLINC03927-IBu 0.82 1.00e-04 2.00e-03
Smp_083990.2 SmLINC04421-IBu 0.83 9.27e-05 1.30e-03
Smp_083990.2 SmLINC04478-IBu 0.81 2.00e-04 2.40e-03
Smp_083990.2 SmLINC04521-IBu 0.84 7.29e-05 1.10e-03
Smp_083990.2 SmLINC04684-IBu 0.87 1.86e-05 4.00e-04
Smp_083990.2 SmLINC05147-IBu 0.82 1.00e-04 1.90e-03
Smp_083990.2 SmLINC05258-IBu 0.87 1.97e-05 4.00e-04
Smp_083990.2 SmLINC06010-IBu 0.80 3.00e-04 3.30e-03
Smp_083990.2 SmLINC06221-IBu 0.87 1.67e-05 3.00e-04
Smp_083990.2 SmLINC06444-IBu 0.80 2.00e-04 3.00e-03
Smp_083990.2 SmLINC06543-IBu 0.84 6.44e-05 1.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01052-IBu 0 7.12 3.90 9.05 9.05
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01404-IBu 0 2.90 1.94 5.92 5.78
SmLINC02579-IBu 0 3.65 3.89 6.08 5.94
SmLINC02929-IBu 0 1.28 1.36 4.28 4.99
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC04018-IBu 0 1.12 0.70 4.37 4.21
SmLINC04394-IBu 0 3.73 2.19 6.11 6.20
SmLINC04725-IBu 0 5.17 4.46 7.70 7.91
SmLINC05059-IBu 0 4.58 3.08 6.02 6.31
SmLINC06740-IBu 0 1.19 0.13 3.75 3.91
SmLINC07026-IBu 0 4.78 5.52 8.98 8.96
Smp_005900.1 0 0.86 2.13 4.13 4.15
Smp_010660.1 0 3.34 4.59 5.63 5.67
Smp_014260.1 0 2.10 2.61 4.63 5.12
Smp_015520.1 0 0.82 1.46 4.29 4.40
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_021260.1 0 2.83 3.49 6.01 5.48
Smp_025410.1 0 1.11 -1.01 3.56 3.29
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_035010.1 0 0.83 -0.28 3.11 3.90
Smp_051220.1 0 1.22 1.40 5.06 4.87
Smp_055100.1 0 3.79 4.89 6.93 6.77
Smp_055140.1 0 0.48 -0.65 3.41 3.43
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_056990.1 0 1.79 1.97 4.79 4.96
Smp_062720.1 0 -0.73 -0.47 -6.25 -5.83
Smp_068180.1 0 2.07 2.85 6.10 6.55
Smp_074260.1 0 0.68 1.93 4.41 5.05
Smp_077310.1 0 0.24 -0.20 3.38 3.16
Smp_077580.1 0 2.38 2.38 5.95 5.75
Smp_081720.1 0 2.58 3.44 6.45 6.27
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_084910.1 0 1.16 1.56 4.92 5.27
Smp_088360.1 0 -1.38 -2.65 2.33 2.20
Smp_090080.1 0 0.86 0.16 4.57 4.29
Smp_090820.1 0 1.10 1.84 3.87 4.42
Smp_095500.1 0 6.31 4.28 7.08 7.78
Smp_097740.1 0 0.66 1.32 3.83 3.96
Smp_105200.1 0 2.37 -1.01 5.20 5.56
Smp_120180.1 0 4.83 5.12 7.05 7.67
Smp_130500.1 0 3.39 1.94 5.67 6.59
Smp_133430.1 0 0.76 0.64 6.00 6.31
Smp_133650.1 0 1.88 2.30 5.21 5.35
Smp_136990.1 0 0.45 0.60 3.19 3.84
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_139540.2 0 4.25 2.46 5.22 5.47
Smp_140650.1 0 1.23 1.76 4.59 4.32
Smp_141490.1 0 3.01 3.92 6.69 6.90
Smp_143670.1 0 1.96 2.97 4.69 5.17
Smp_150020.1 0 1.38 1.09 4.34 4.41
Smp_155700.1 0 1.10 2.60 5.12 5.29
Smp_157820.1 0 1.15 1.82 5.12 5.33
Smp_160090.2 0 9.28 9.75 11.69 12.26
Smp_164330.1 0 3.13 3.46 6.69 6.39
Smp_165480.1 0 2.20 2.03 5.42 5.97
Smp_170520.1 0 3.59 3.96 7.18 7.41
Smp_172890.1 0 1.76 2.90 5.30 4.98
Smp_174490.1 0 1.42 2.17 6.16 6.24
Smp_176120.1 0 1.52 2.52 5.55 5.77
Smp_203910.1 0 3.20 0.27 6.45 7.04
Smp_204720.1 0 1.63 2.16 4.61 4.41
Smp_205920.1 0 2.95 2.42 4.90 4.77
Smp_206010.1 0 -1.00 -1.63 -4.88 -4.53
Smp_213010.1 0 1.50 2.79 4.69 5.15
Smp_213230.1 0 1.80 1.69 4.03 4.53

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083990.2 SmLINC00376-IBu 0.95 3.50e-08 5.30e-06
Smp_083990.2 SmLINC01052-IBu 0.90 4.19e-06 1.00e-04
Smp_083990.2 SmLINC01171-IBu 0.91 1.78e-06 8.04e-05
Smp_083990.2 SmLINC01404-IBu 0.91 1.30e-06 6.45e-05
Smp_083990.2 SmLINC02579-IBu 0.96 2.87e-09 1.00e-06
Smp_083990.2 SmLINC02929-IBu 0.92 8.18e-07 4.63e-05
Smp_083990.2 SmLINC03236-IBu 0.95 2.98e-08 4.76e-06
Smp_083990.2 SmLINC04018-IBu 0.91 1.25e-06 6.25e-05
Smp_083990.2 SmLINC04394-IBu 0.93 2.42e-07 1.99e-05
Smp_083990.2 SmLINC04725-IBu 0.92 7.77e-07 4.47e-05
Smp_083990.2 SmLINC05059-IBu 0.90 3.84e-06 1.00e-04
Smp_083990.2 SmLINC06740-IBu 0.92 7.65e-07 4.42e-05
Smp_083990.2 SmLINC07026-IBu 0.90 2.60e-06 1.00e-04
Smp_005900.1 Smp_083990.2 0.90 4.81e-06 1.00e-04
Smp_083990.2 Smp_010660.1 0.90 3.49e-06 1.00e-04
Smp_083990.2 Smp_014260.1 0.95 3.15e-08 4.94e-06
Smp_015520.1 Smp_083990.2 0.91 1.92e-06 8.45e-05
Smp_083990.2 Smp_020760.2 0.96 1.23e-08 2.62e-06
Smp_083990.2 Smp_021260.1 0.91 2.43e-06 9.98e-05
Smp_083990.2 Smp_025410.1 0.90 4.15e-06 1.00e-04
Smp_031040.1 Smp_083990.2 0.91 1.39e-06 6.74e-05
Smp_083990.2 Smp_035010.1 0.91 1.50e-06 7.10e-05
Smp_083990.2 Smp_051220.1 0.92 1.00e-06 5.33e-05
Smp_083990.2 Smp_055100.1 0.91 1.88e-06 8.35e-05
Smp_083990.2 Smp_055140.1 0.96 7.90e-09 1.95e-06
Smp_083990.2 Smp_055340.2 0.90 2.82e-06 1.00e-04
Smp_083990.2 Smp_056990.1 0.95 1.79e-08 3.37e-06
Smp_083990.2 Smp_062720.1 -0.90 3.18e-06 1.00e-04
Smp_083990.2 Smp_068180.1 0.91 2.15e-06 9.15e-05
Smp_083990.2 Smp_074260.1 0.90 4.47e-06 1.00e-04
Smp_083990.2 Smp_077310.1 0.95 3.43e-08 5.24e-06
Smp_083990.2 Smp_077580.1 0.90 4.50e-06 1.00e-04
Smp_083990.2 Smp_081720.1 0.91 2.26e-06 9.48e-05
Smp_083990.2 Smp_084910.1 0.90 3.77e-06 1.00e-04
Smp_083990.2 Smp_088360.1 0.93 3.06e-07 2.33e-05
Smp_083990.2 Smp_090080.1 0.90 3.23e-06 1.00e-04
Smp_083990.2 Smp_090820.1 0.90 3.90e-06 1.00e-04
Smp_083990.2 Smp_095500.1 0.96 4.38e-09 1.32e-06
Smp_083990.2 Smp_097740.1 0.91 2.22e-06 9.37e-05
Smp_105200.1 Smp_083990.2 0.97 4.15e-10 2.90e-07
Smp_083990.2 Smp_120180.1 0.94 7.99e-08 9.28e-06
Smp_083990.2 Smp_130500.1 0.91 1.29e-06 6.42e-05
Smp_083990.2 Smp_133430.1 0.91 1.98e-06 8.65e-05
Smp_083990.2 Smp_133650.1 0.95 3.81e-08 5.62e-06
Smp_083990.2 Smp_136990.1 0.92 1.09e-06 5.69e-05
Smp_083990.2 Smp_137000.2 0.91 1.86e-06 8.29e-05
Smp_083990.2 Smp_139540.2 0.92 1.09e-06 5.67e-05
Smp_083990.2 Smp_140650.1 0.91 1.28e-06 6.38e-05
Smp_083990.2 Smp_141490.1 0.93 3.91e-07 2.77e-05
Smp_083990.2 Smp_143670.1 0.90 2.61e-06 1.00e-04
Smp_083990.2 Smp_150020.1 0.94 1.33e-07 1.32e-05
Smp_155700.1 Smp_083990.2 0.90 2.57e-06 1.00e-04
Smp_083990.2 Smp_157820.1 0.91 2.40e-06 9.92e-05
Smp_083990.2 Smp_160090.2 0.91 2.02e-06 8.77e-05
Smp_164330.1 Smp_083990.2 0.92 1.18e-06 6.01e-05
Smp_083990.2 Smp_165480.1 0.92 8.63e-07 4.81e-05
Smp_083990.2 Smp_170520.1 0.90 3.87e-06 1.00e-04
Smp_083990.2 Smp_172890.1 0.90 4.02e-06 1.00e-04
Smp_083990.2 Smp_174490.1 0.90 4.19e-06 1.00e-04
Smp_083990.2 Smp_176120.1 0.91 1.25e-06 6.28e-05
Smp_083990.2 Smp_203910.1 0.91 1.85e-06 8.26e-05
Smp_083990.2 Smp_204720.1 0.93 4.68e-07 3.13e-05
Smp_083990.2 Smp_205920.1 0.90 4.45e-06 1.00e-04
Smp_083990.2 Smp_206010.1 -0.90 4.55e-06 1.00e-04
Smp_083990.2 Smp_213010.1 0.90 3.76e-06 1.00e-04
Smp_083990.2 Smp_213230.1 0.90 4.29e-06 1.00e-04