Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_083380.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083380.2 SmLINC00372-IBu 0.90 3.98e-06 1.00e-04
Smp_083380.2 SmLINC01316-IBu 0.87 1.65e-05 3.00e-04
Smp_083380.2 SmLINC02646-IBu 0.84 6.74e-05 1.00e-03
Smp_083380.2 SmLINC06646-IBu 0.92 7.71e-07 4.26e-05
Smp_083380.2 SmLINC06700-IBu 0.85 5.28e-05 8.00e-04
Smp_083380.2 SmLINC06836-IBu 0.89 7.33e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC00781-IBu 0 6.19 6.44 3.58 2.95
SmLINC01453-IBu 0 3.93 3.65 1.37 -4.56
SmLINC02626-IBu 0 8.15 9.29 3.73 6.59
SmLINC02970-IBu 0 2.59 3.54 0.54 -1.36
SmLINC03132-IBu 0 3.76 4.91 1.54 -0.47
SmLINC03718-IBu 0 6.68 7.60 6.73 4.75
SmLINC03953-IBu 0 1.67 3.25 -2.76 -1.08
SmLINC04215-IBu 0 6.59 8.42 5.71 3.29
SmLINC05395-IBu 0 9.00 9.50 8.73 9.28
SmLINC05660-IBu 0 5.07 6.19 0.00 6.57
SmLINC06048-IBu 0 0.79 1.93 -4.19 -7.12
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06779-IBu 0 4.01 4.11 0.72 1.12
SmLINC07012-IBu 0 4.23 5.09 -1.27 -4.32
SmLINC07014-IBu 0 0.31 0.27 -11.64 -11.64
Smp_015070.2 0 4.80 5.60 1.08 -0.65
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_018800.1 0 3.14 4.22 -2.08 -1.80
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_024820.1 0 4.10 4.75 1.46 1.82
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_029240.1 0 3.97 4.74 2.59 1.22
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_032320.2 0 -0.17 0.68 -9.42 -9.42
Smp_032740.1 0 2.87 3.50 0.35 -1.77
Smp_033670.2 0 1.59 2.15 -4.87 -4.87
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_075290.4 0 0.20 2.62 -2.13 -0.42
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_099560.1 0 8.15 8.89 -2.27 -2.27
Smp_100130.2 0 8.47 10.05 8.41 9.81
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_103930.1 0 0.87 2.20 -7.48 0.71
Smp_105710.2 0 7.84 8.99 0.00 0.00
Smp_118960.1 0 -0.29 0.29 -8.48 -0.88
Smp_123000.2 0 1.85 1.78 -1.88 -2.33
Smp_125830.1 0 3.00 3.31 -4.80 -4.80
Smp_126560.1 0 1.05 1.45 -4.09 -4.98
Smp_129780.1 0 0.66 -0.31 -3.14 -4.36
Smp_136120.1 0 5.65 6.93 4.13 3.70
Smp_140130.1 0 1.66 2.18 -1.05 -2.58
Smp_141630.4 0 12.63 13.76 12.50 12.34
Smp_142980.1 0 0.95 0.31 -2.54 -3.71
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_145950.1 0 1.16 2.62 -4.07 -0.95
Smp_146920.1 0 0.99 1.37 -7.20 -7.20
Smp_152170.1 0 2.88 3.15 -0.68 -0.83
Smp_153210.1 0 3.24 5.11 0.30 -0.00
Smp_155170.1 0 2.84 3.14 -1.92 0.05
Smp_157270.1 0 3.45 4.02 -0.36 -1.80
Smp_157280.1 0 4.32 5.40 2.85 1.60
Smp_157840.1 0 1.84 2.05 -4.37 -2.80
Smp_159070.4 0 3.29 5.54 2.90 0.83
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_161280.1 0 1.17 1.48 -9.00 -4.95
Smp_169500.1 0 1.36 1.90 -2.93 -5.45
Smp_174170.1 0 2.27 3.86 1.11 -0.90
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_190370.1 0 1.12 2.62 -1.76 -2.23
Smp_194670.1 0 1.55 1.93 -1.67 -3.11
Smp_196410.1 0 0.98 1.80 -3.57 -2.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083380.2 SmLINC00372-IBu 0.90 3.98e-06 1.00e-04
Smp_083380.2 SmLINC00781-IBu 0.94 1.23e-07 1.24e-05
Smp_083380.2 SmLINC01453-IBu 0.90 4.80e-06 1.00e-04
Smp_083380.2 SmLINC02626-IBu 0.98 3.57e-12 1.45e-08
Smp_083380.2 SmLINC02970-IBu 0.95 4.75e-08 6.52e-06
Smp_083380.2 SmLINC03132-IBu 0.98 1.44e-11 3.46e-08
Smp_083380.2 SmLINC03718-IBu 0.91 1.66e-06 7.65e-05
Smp_083380.2 SmLINC03953-IBu 0.95 2.64e-08 4.38e-06
Smp_083380.2 SmLINC04215-IBu 0.92 5.72e-07 3.61e-05
Smp_083380.2 SmLINC05395-IBu 0.90 4.27e-06 1.00e-04
Smp_083380.2 SmLINC05660-IBu 0.92 5.29e-07 3.41e-05
Smp_083380.2 SmLINC06048-IBu 0.93 4.13e-07 2.88e-05
Smp_083380.2 SmLINC06646-IBu 0.92 7.71e-07 4.44e-05
Smp_083380.2 SmLINC06779-IBu 0.90 4.23e-06 1.00e-04
Smp_083380.2 SmLINC07012-IBu 0.90 2.84e-06 1.00e-04
Smp_083380.2 SmLINC07014-IBu 0.90 4.51e-06 1.00e-04
Smp_015070.2 Smp_083380.2 0.96 1.15e-08 2.50e-06
Smp_083380.2 Smp_017650.1 0.98 4.81e-11 7.34e-08
Smp_083380.2 Smp_018800.1 0.93 4.40e-07 3.00e-05
Smp_021340.3 Smp_083380.2 0.95 2.44e-08 4.15e-06
Smp_024820.1 Smp_083380.2 0.90 2.52e-06 1.00e-04
Smp_027990.1 Smp_083380.2 0.93 3.11e-07 2.36e-05
Smp_029240.1 Smp_083380.2 0.93 2.93e-07 2.26e-05
Smp_083380.2 Smp_032120.1 0.93 4.93e-07 3.25e-05
Smp_032320.2 Smp_083380.2 0.93 3.30e-07 2.46e-05
Smp_032740.1 Smp_083380.2 0.90 2.79e-06 1.00e-04
Smp_033670.2 Smp_083380.2 0.90 4.22e-06 1.00e-04
Smp_034840.1 Smp_083380.2 0.97 4.04e-10 2.85e-07
Smp_036270.3 Smp_083380.2 0.91 2.30e-06 9.60e-05
Smp_049600.3 Smp_083380.2 0.94 1.10e-07 1.15e-05
Smp_052290.1 Smp_083380.2 0.95 4.75e-08 6.52e-06
Smp_083380.2 Smp_059340.3 0.96 1.17e-08 2.54e-06
Smp_059530.1 Smp_083380.2 0.97 1.13e-09 5.52e-07
Smp_062070.1 Smp_083380.2 0.93 5.12e-07 3.34e-05
Smp_062610.2 Smp_083380.2 0.93 3.15e-07 2.38e-05
Smp_075290.4 Smp_083380.2 0.91 1.59e-06 7.42e-05
Smp_079260.1 Smp_083380.2 0.97 2.25e-09 8.59e-07
Smp_083380.2 Smp_084940.2 0.97 7.78e-10 4.34e-07
Smp_098370.1 Smp_083380.2 0.93 2.75e-07 2.17e-05
Smp_099160.4 Smp_083380.2 0.91 1.28e-06 6.37e-05
Smp_099560.1 Smp_083380.2 0.90 2.99e-06 1.00e-04
Smp_100130.2 Smp_083380.2 0.90 3.05e-06 1.00e-04
Smp_103540.1 Smp_083380.2 0.96 7.86e-09 1.94e-06
Smp_103930.1 Smp_083380.2 0.93 4.07e-07 2.85e-05
Smp_105710.2 Smp_083380.2 0.94 1.32e-07 1.31e-05
Smp_118960.1 Smp_083380.2 0.94 1.13e-07 1.17e-05
Smp_123000.2 Smp_083380.2 0.92 6.12e-07 3.78e-05
Smp_125830.1 Smp_083380.2 0.94 1.15e-07 1.19e-05
Smp_126560.1 Smp_083380.2 0.95 3.21e-08 5.00e-06
Smp_129780.1 Smp_083380.2 0.92 6.20e-07 3.82e-05
Smp_136120.1 Smp_083380.2 0.91 1.57e-06 7.33e-05
Smp_140130.1 Smp_083380.2 0.95 4.06e-08 5.87e-06
Smp_141630.4 Smp_083380.2 0.94 7.89e-08 9.21e-06
Smp_142980.1 Smp_083380.2 0.94 1.47e-07 1.41e-05
Smp_143180.1 Smp_083380.2 0.95 1.52e-08 3.01e-06
Smp_145950.1 Smp_083380.2 0.94 1.00e-07 1.08e-05
Smp_083380.2 Smp_146920.1 0.98 1.16e-10 1.28e-07
Smp_152170.1 Smp_083380.2 0.95 4.09e-08 5.90e-06
Smp_153210.1 Smp_083380.2 0.95 5.67e-08 7.36e-06
Smp_155170.1 Smp_083380.2 0.92 6.24e-07 3.83e-05
Smp_157270.1 Smp_083380.2 0.92 5.82e-07 3.65e-05
Smp_157280.1 Smp_083380.2 0.95 5.23e-08 6.96e-06
Smp_157840.1 Smp_083380.2 0.94 1.07e-07 1.13e-05
Smp_083380.2 Smp_159070.4 0.90 4.32e-06 1.00e-04
Smp_159150.1 Smp_083380.2 0.91 1.28e-06 6.35e-05
Smp_161280.1 Smp_083380.2 0.92 7.57e-07 4.38e-05
Smp_169500.1 Smp_083380.2 0.96 7.29e-09 1.85e-06
Smp_174170.1 Smp_083380.2 0.93 4.14e-07 2.88e-05
Smp_180630.1 Smp_083380.2 0.95 3.52e-08 5.33e-06
Smp_190370.1 Smp_083380.2 0.91 1.76e-06 7.96e-05
Smp_194670.1 Smp_083380.2 0.95 5.62e-08 7.31e-06
Smp_196410.1 Smp_083380.2 0.95 4.07e-08 5.88e-06