Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_083340.4 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083340.4 SmLINC00784-IBu 0.82 1.00e-04 1.90e-03
Smp_083340.4 SmLINC02630-IBu 0.80 2.00e-04 3.00e-03
Smp_083340.4 SmLINC05720-IBu 0.82 1.00e-04 2.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04606-IBu 0 -0.48 -2.83 -5.66 -8.00
SmLINC06212-IBu 0 -0.75 -3.47 -10.55 -10.55
Smp_022730.1 0 -0.73 -1.37 -5.39 -4.86
Smp_056680.2 0 0.01 -3.20 -6.32 -3.44
Smp_056680.3 0 0.01 -3.20 -6.32 -3.44
Smp_072430.1 0 -0.24 -3.63 -7.73 -4.03
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_159130.1 0 0.25 -4.61 -5.63 -8.00
Smp_165510.1 0 0.09 -3.88 -8.04 -8.63
Smp_175240.1 0 -0.51 -4.28 -7.25 -3.60
Smp_179300.3 0 -0.68 -3.23 -9.39 -8.12
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083340.4 SmLINC04606-IBu 0.92 7.92e-07 4.53e-05
Smp_083340.4 SmLINC06212-IBu 0.91 1.46e-06 6.96e-05
Smp_083340.4 Smp_022730.1 0.92 1.08e-06 5.64e-05
Smp_056680.2 Smp_083340.4 0.90 3.52e-06 1.00e-04
Smp_056680.3 Smp_083340.4 0.90 3.52e-06 1.00e-04
Smp_083340.4 Smp_072430.1 0.95 4.79e-08 6.56e-06
Smp_077690.1 Smp_083340.4 0.95 2.01e-08 3.64e-06
Smp_083340.4 Smp_140680.2 0.91 1.57e-06 7.34e-05
Smp_083340.4 Smp_159130.1 0.95 5.93e-08 7.58e-06
Smp_083340.4 Smp_165510.1 0.91 1.57e-06 7.34e-05
Smp_083340.4 Smp_175240.1 0.90 4.46e-06 1.00e-04
Smp_083340.4 Smp_179300.3 0.92 1.05e-06 5.52e-05
Smp_184760.1 Smp_083340.4 0.95 2.22e-08 3.90e-06
Smp_083340.4 Smp_202140.1 0.92 5.90e-07 3.68e-05