Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_083340.3 Data

Correlation between Smp_083340.3 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_083340.3 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
Smp_083340.3 0 -0.68 -0.97 -5.05 -9.56

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083340.3 SmLINC00001-IBu -0.87 1.68e-05 3.00e-04
Smp_083340.3 SmLINC00004-IBu -0.89 5.95e-06 1.00e-04
Smp_083340.3 SmLINC00369-IBu -0.89 7.83e-06 2.00e-04
Smp_083340.3 SmLINC00525-IBu -0.82 1.00e-04 2.10e-03
Smp_083340.3 SmLINC00548-IBu -0.80 2.00e-04 3.00e-03
Smp_083340.3 SmLINC00633-IBu -0.83 9.98e-05 1.40e-03
Smp_083340.3 SmLINC01084-IBu -0.86 2.94e-05 5.00e-04
Smp_083340.3 SmLINC01122-IBu -0.84 6.71e-05 1.00e-03
Smp_083340.3 SmLINC01431-IBu -0.91 1.63e-06 7.27e-05
Smp_083340.3 SmLINC01432-IBu -0.85 5.57e-05 9.00e-04
Smp_083340.3 SmLINC01538-IBu -0.81 2.00e-04 2.40e-03
Smp_083340.3 SmLINC01569-IBu -0.83 1.00e-04 1.60e-03
Smp_083340.3 SmLINC01733-IBu -0.82 1.00e-04 1.70e-03
Smp_083340.3 SmLINC02084-IBu -0.88 9.29e-06 2.00e-04
Smp_083340.3 SmLINC02255-IBu 0.80 3.00e-04 3.10e-03
Smp_083340.3 SmLINC02394-IBu -0.85 4.55e-05 7.00e-04
Smp_083340.3 SmLINC02539-IBu -0.82 1.00e-04 1.80e-03
Smp_083340.3 SmLINC02545-IBu -0.80 3.00e-04 3.30e-03
Smp_083340.3 SmLINC02546-IBu -0.85 5.23e-05 8.00e-04
Smp_083340.3 SmLINC03927-IBu -0.85 4.76e-05 8.00e-04
Smp_083340.3 SmLINC04421-IBu -0.90 4.16e-06 1.00e-04
Smp_083340.3 SmLINC04423-IBu -0.87 2.16e-05 4.00e-04
Smp_083340.3 SmLINC04478-IBu -0.85 5.71e-05 9.00e-04
Smp_083340.3 SmLINC04521-IBu -0.85 4.93e-05 8.00e-04
Smp_083340.3 SmLINC05147-IBu -0.85 4.67e-05 8.00e-04
Smp_083340.3 SmLINC05274-IBu 0.96 3.65e-09 1.09e-06
Smp_083340.3 SmLINC05284-IBu 0.81 2.00e-04 2.70e-03
Smp_083340.3 SmLINC05289-IBu -0.87 2.33e-05 4.00e-04
Smp_083340.3 SmLINC05604-IBu -0.88 1.14e-05 2.00e-04
Smp_083340.3 SmLINC06024-IBu -0.87 2.37e-05 4.00e-04
Smp_083340.3 SmLINC06145-IBu -0.82 1.00e-04 2.00e-03

Correlation between Smp_083340.3 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_083340.3 0 -0.68 -0.97 -5.05 -9.56
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083340.3 Smp_015850.2 0.96 3.67e-09 1.18e-06
Smp_083340.3 Smp_024180.2 -0.90 3.85e-06 1.00e-04
Smp_083340.3 Smp_033260.1 -0.93 3.82e-07 2.72e-05
Smp_083340.3 Smp_038870.2 -0.93 4.16e-07 2.89e-05
Smp_083340.3 Smp_050350.3 -0.92 7.58e-07 4.39e-05
Smp_083340.3 Smp_052280.2 -0.91 2.07e-06 8.93e-05
Smp_083340.3 Smp_056460.1 -0.92 7.75e-07 4.46e-05
Smp_083340.3 Smp_079420.1 -0.91 1.20e-06 6.09e-05
Smp_083340.3 Smp_094050.1 -0.91 2.46e-06 1.00e-04
Smp_083340.3 Smp_156930.1 -0.90 3.39e-06 1.00e-04
Smp_083340.3 Smp_169670.1 -0.90 2.65e-06 1.00e-04
Smp_083340.3 Smp_172960.1 -0.90 4.54e-06 1.00e-04
Smp_083340.3 Smp_192780.1 -0.90 2.63e-06 1.00e-04
Smp_194860.1 Smp_083340.3 -0.92 1.17e-06 5.97e-05