Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_083340.1 Data

Correlation between Smp_083340.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_083340.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_083340.1 0 -1.27 -1.69 -7.43 -6.68

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083340.1 SmLINC01431-IBu -0.80 3.00e-04 3.20e-03
Smp_083340.1 SmLINC02255-IBu 0.85 4.88e-05 8.00e-04
Smp_083340.1 SmLINC02630-IBu 0.80 2.00e-04 3.00e-03
Smp_083340.1 SmLINC02657-IBu 0.83 1.00e-04 1.60e-03
Smp_083340.1 SmLINC03769-IBu 0.84 8.00e-05 1.20e-03
Smp_083340.1 SmLINC04421-IBu -0.81 2.00e-04 2.40e-03
Smp_083340.1 SmLINC05274-IBu 0.92 7.11e-07 4.03e-05
Smp_083340.1 SmLINC05284-IBu 0.80 2.00e-04 2.70e-03
Smp_083340.1 SmLINC05989-IBu 0.83 1.00e-04 1.50e-03
Smp_083340.1 SmLINC06128-IBu 0.81 2.00e-04 2.40e-03
Smp_083340.1 SmLINC06890-IBu 0.86 2.94e-05 5.00e-04
Smp_083340.1 SmLINC06903-IBu 0.90 4.78e-06 1.00e-04

Correlation between Smp_083340.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_083340.1 0 -1.27 -1.69 -7.43 -6.68
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083340.1 Smp_035090.2 0.91 1.39e-06 6.74e-05
Smp_083340.1 Smp_186130.1 0.94 6.28e-08 7.88e-06
Smp_192890.1 Smp_083340.1 0.94 8.91e-08 9.99e-06
Smp_206200.1 Smp_083340.1 0.92 1.02e-06 5.41e-05