Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_083180.1 Data

Correlation between Smp_083180.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_083180.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083180.1 SmLINC05989-IBu 0.84 7.81e-05 1.10e-03
Smp_083180.1 SmLINC06128-IBu 0.80 3.00e-04 3.20e-03
Smp_083180.1 SmLINC06535-IBu 0.86 3.57e-05 6.00e-04

Correlation between Smp_083180.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC01707-IBu 0 -1.39 -3.43 -3.89 -3.93
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36
Smp_018510.1 0 -0.95 -2.76 -7.05 -6.82
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_037020.1 0 -2.12 -8.24 -8.43 -8.13
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_100790.1 0 -1.29 -9.36 -9.36 -9.36
Smp_114740.1 0 -1.29 -9.36 -9.36 -9.36
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_157450.1 0 -1.07 -2.97 -4.27 -4.05
Smp_162370.1 0 -1.45 -4.56 -9.04 -5.93
Smp_167680.2 0 -0.35 -3.78 -5.67 -5.45
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_174520.1 0 -1.49 -5.54 -1.86 -3.92
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_187590.1 0 -0.60 -3.82 -4.10 -3.89
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195060.1 0 -0.69 -4.00 -2.76 -3.57
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083180.1 SmLINC01707-IBu 0.95 3.89e-08 5.70e-06
Smp_083180.1 Smp_004230.1 0.96 1.03e-08 2.32e-06
Smp_018510.1 Smp_083180.1 0.91 1.92e-06 8.46e-05
Smp_083180.1 Smp_033000.1 0.92 7.88e-07 4.51e-05
Smp_083180.1 Smp_037020.1 0.92 7.87e-07 4.51e-05
Smp_083180.1 Smp_051230.3 0.92 9.18e-07 5.02e-05
Smp_083180.1 Smp_051230.4 0.96 6.23e-09 1.67e-06
Smp_100790.1 Smp_083180.1 0.96 1.03e-08 2.32e-06
Smp_083180.1 Smp_114740.1 0.96 1.03e-08 2.32e-06
Smp_083180.1 Smp_145810.2 0.90 3.55e-06 1.00e-04
Smp_083180.1 Smp_157450.1 0.91 1.68e-06 7.70e-05
Smp_083180.1 Smp_162370.1 0.93 2.48e-07 2.02e-05
Smp_083180.1 Smp_167680.2 0.91 1.29e-06 6.41e-05
Smp_083180.1 Smp_168080.2 0.93 2.79e-07 2.19e-05
Smp_174520.1 Smp_083180.1 0.91 1.42e-06 6.86e-05
Smp_185220.1 Smp_083180.1 0.92 8.26e-07 4.66e-05
Smp_083180.1 Smp_187590.1 0.93 3.43e-07 2.53e-05
Smp_083180.1 Smp_188900.1 0.91 1.72e-06 7.85e-05
Smp_195060.1 Smp_083180.1 0.94 1.92e-07 1.69e-05
Smp_083180.1 Smp_195070.1 0.95 3.13e-08 4.92e-06