Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_081790.1 Data

Correlation between Smp_081790.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_081790.1 0 0.27 0.87 3.44 3.91

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_081790.1 SmLINC04271-IBu -0.7 3.10e-03 1.49e-02

Correlation between Smp_081790.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_081790.1 0 0.27 0.87 3.44 3.91

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_081790.1 SmLINC00037-IBu -0.81 2.00e-04 2.60e-03
Smp_081790.1 SmLINC00133-IBu -0.80 3.00e-04 3.30e-03
Smp_081790.1 SmLINC00282-IBu -0.85 5.35e-05 8.00e-04
Smp_081790.1 SmLINC00369-IBu 0.85 4.65e-05 8.00e-04
Smp_081790.1 SmLINC00376-IBu 0.80 2.00e-04 3.00e-03
Smp_081790.1 SmLINC00548-IBu 0.82 1.00e-04 1.70e-03
Smp_081790.1 SmLINC00554-IBu -0.80 3.00e-04 3.40e-03
Smp_081790.1 SmLINC00556-IBu -0.81 2.00e-04 2.50e-03
Smp_081790.1 SmLINC00633-IBu 0.82 1.00e-04 2.10e-03
Smp_081790.1 SmLINC01084-IBu 0.82 1.00e-04 1.70e-03
Smp_081790.1 SmLINC01122-IBu 0.83 1.00e-04 1.50e-03
Smp_081790.1 SmLINC01431-IBu 0.87 2.29e-05 4.00e-04
Smp_081790.1 SmLINC01435-IBu 0.80 2.00e-04 2.90e-03
Smp_081790.1 SmLINC01538-IBu 0.84 8.71e-05 1.20e-03
Smp_081790.1 SmLINC01569-IBu 0.83 1.00e-04 1.40e-03
Smp_081790.1 SmLINC01637-IBu -0.83 1.00e-04 1.60e-03
Smp_081790.1 SmLINC01733-IBu 0.87 2.15e-05 4.00e-04
Smp_081790.1 SmLINC01746-IBu 0.83 1.00e-04 1.60e-03
Smp_081790.1 SmLINC02084-IBu 0.84 6.49e-05 1.00e-03
Smp_081790.1 SmLINC02255-IBu -0.94 1.26e-07 1.20e-05
Smp_081790.1 SmLINC02546-IBu 0.83 1.00e-04 1.60e-03
Smp_081790.1 SmLINC02630-IBu -0.91 2.37e-06 9.48e-05
Smp_081790.1 SmLINC02657-IBu -0.92 7.50e-07 4.18e-05
Smp_081790.1 SmLINC03309-IBu 0.83 1.00e-04 1.50e-03
Smp_081790.1 SmLINC03693-IBu 0.84 6.66e-05 1.00e-03
Smp_081790.1 SmLINC03769-IBu -0.81 2.00e-04 2.30e-03
Smp_081790.1 SmLINC03849-IBu -0.81 2.00e-04 2.50e-03
Smp_081790.1 SmLINC03927-IBu 0.80 2.00e-04 2.80e-03
Smp_081790.1 SmLINC03930-IBu -0.82 1.00e-04 1.90e-03
Smp_081790.1 SmLINC04421-IBu 0.82 1.00e-04 1.80e-03
Smp_081790.1 SmLINC04432-IBu 0.85 5.84e-05 9.00e-04
Smp_081790.1 SmLINC04475-IBu 0.84 6.14e-05 9.00e-04
Smp_081790.1 SmLINC04478-IBu 0.81 2.00e-04 2.70e-03
Smp_081790.1 SmLINC04521-IBu 0.83 8.94e-05 1.30e-03
Smp_081790.1 SmLINC04684-IBu 0.81 2.00e-04 2.40e-03
Smp_081790.1 SmLINC05147-IBu 0.84 6.55e-05 1.00e-03
Smp_081790.1 SmLINC05258-IBu 0.80 2.00e-04 3.00e-03
Smp_081790.1 SmLINC05274-IBu -0.80 3.00e-04 3.30e-03
Smp_081790.1 SmLINC05284-IBu -0.88 1.13e-05 2.00e-04
Smp_081790.1 SmLINC05720-IBu -0.81 2.00e-04 2.60e-03
Smp_081790.1 SmLINC05989-IBu -0.81 2.00e-04 2.40e-03
Smp_081790.1 SmLINC06128-IBu -0.86 3.12e-05 6.00e-04
Smp_081790.1 SmLINC06221-IBu 0.86 3.16e-05 6.00e-04
Smp_081790.1 SmLINC06449-IBu 0.84 6.73e-05 1.00e-03
Smp_081790.1 SmLINC06535-IBu -0.91 1.53e-06 6.96e-05
Smp_081790.1 SmLINC06543-IBu 0.82 1.00e-04 1.90e-03
Smp_081790.1 SmLINC06903-IBu -0.81 2.00e-04 2.50e-03

Correlation between Smp_081790.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_081790.1 0 0.27 0.87 3.44 3.91
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_081790.1 Smp_035090.2 -0.92 6.50e-07 3.94e-05
Smp_081790.1 Smp_051210.3 0.91 1.56e-06 7.32e-05
Smp_081790.1 Smp_055340.2 0.97 8.04e-10 4.43e-07
Smp_081790.1 Smp_109240.1 -0.91 2.28e-06 9.55e-05
Smp_081790.1 Smp_160230.1 -0.90 4.67e-06 1.00e-04