Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_080920.3 Data

Correlation between Smp_080920.3 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_080920.3 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_080920.3 0 -0.58 -3.50 -2.71 -4.51

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_080920.3 SmLINC02038-IBu 0.85 4.27e-05 7.00e-04
Smp_080920.3 SmLINC03769-IBu 0.86 3.53e-05 6.00e-04
Smp_080920.3 SmLINC06890-IBu 0.81 2.00e-04 2.60e-03
Smp_080920.3 SmLINC06903-IBu 0.82 1.00e-04 1.70e-03

Correlation between Smp_080920.3 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_009320.1 0 -0.45 -10.12 -7.98 -10.12
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_080920.3 0 -0.58 -3.50 -2.71 -4.51
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009320.1 Smp_080920.3 0.94 8.99e-08 1.00e-05
Smp_080920.3 Smp_028990.3 0.90 3.04e-06 1.00e-04
Smp_096020.1 Smp_080920.3 0.90 4.50e-06 1.00e-04
Smp_205860.1 Smp_080920.3 0.93 4.13e-07 2.88e-05