Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_080650.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_080650.1 0 -3.53 -2.74 1.91 1.37

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_080650.1 SmLINC00171-IBu 0.97 9.18e-10 4.46e-07
Smp_080650.1 SmLINC00477-IBu 0.91 1.83e-06 7.89e-05
Smp_080650.1 SmLINC00484-IBu 0.80 3.00e-04 3.40e-03
Smp_080650.1 SmLINC00548-IBu 0.90 3.50e-06 1.00e-04
Smp_080650.1 SmLINC00633-IBu 0.85 4.02e-05 7.00e-04
Smp_080650.1 SmLINC00769-IBu 0.83 1.00e-04 1.60e-03
Smp_080650.1 SmLINC01066-IBu 0.97 1.19e-09 5.30e-07
Smp_080650.1 SmLINC01139-IBu 0.89 7.61e-06 2.00e-04
Smp_080650.1 SmLINC01231-IBu 0.90 3.78e-06 1.00e-04
Smp_080650.1 SmLINC01431-IBu 0.82 1.00e-04 2.10e-03
Smp_080650.1 SmLINC01433-IBu 0.93 4.90e-07 3.10e-05
Smp_080650.1 SmLINC01435-IBu 0.87 2.19e-05 4.00e-04
Smp_080650.1 SmLINC01538-IBu 0.86 2.97e-05 5.00e-04
Smp_080650.1 SmLINC01746-IBu 0.88 1.02e-05 2.00e-04
Smp_080650.1 SmLINC01822-IBu 0.91 1.96e-06 8.28e-05
Smp_080650.1 SmLINC02084-IBu 0.85 4.57e-05 7.00e-04
Smp_080650.1 SmLINC02546-IBu 0.89 7.65e-06 2.00e-04
Smp_080650.1 SmLINC03108-IBu 0.89 6.69e-06 1.00e-04
Smp_080650.1 SmLINC03309-IBu 0.90 3.55e-06 1.00e-04
Smp_080650.1 SmLINC03542-IBu 0.86 2.78e-05 5.00e-04
Smp_080650.1 SmLINC03693-IBu 0.91 2.50e-06 9.87e-05
Smp_080650.1 SmLINC04054-IBu 0.88 1.50e-05 3.00e-04
Smp_080650.1 SmLINC04345-IBu 0.82 1.00e-04 1.70e-03
Smp_080650.1 SmLINC04432-IBu 0.84 8.02e-05 1.20e-03
Smp_080650.1 SmLINC04475-IBu 0.88 1.51e-05 3.00e-04
Smp_080650.1 SmLINC04663-IBu 0.85 4.04e-05 7.00e-04
Smp_080650.1 SmLINC04684-IBu 0.94 1.79e-07 1.53e-05
Smp_080650.1 SmLINC04747-IBu 0.81 2.00e-04 2.40e-03
Smp_080650.1 SmLINC04769-IBu 0.83 9.01e-05 1.30e-03
Smp_080650.1 SmLINC05009-IBu 0.89 5.64e-06 1.00e-04
Smp_080650.1 SmLINC05147-IBu 0.89 5.52e-06 1.00e-04
Smp_080650.1 SmLINC05171-IBu 0.93 4.03e-07 2.70e-05
Smp_080650.1 SmLINC05258-IBu 0.92 7.43e-07 4.16e-05
Smp_080650.1 SmLINC06007-IBu 0.93 4.84e-07 3.07e-05
Smp_080650.1 SmLINC06010-IBu 0.80 2.00e-04 2.80e-03
Smp_080650.1 SmLINC06221-IBu 0.90 3.32e-06 1.00e-04
Smp_080650.1 SmLINC06418-IBu 0.88 1.02e-05 2.00e-04
Smp_080650.1 SmLINC06444-IBu 0.83 1.00e-04 1.60e-03
Smp_080650.1 SmLINC06449-IBu 0.81 1.00e-04 2.30e-03
Smp_080650.1 SmLINC06536-IBu 0.96 6.83e-09 1.65e-06
Smp_080650.1 SmLINC06538-IBu 0.82 1.00e-04 1.70e-03
Smp_080650.1 SmLINC06543-IBu 0.91 1.46e-06 6.73e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_080650.1 0 -3.53 -2.74 1.91 1.37
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_200750.1 0 1.72 7.25 10.11 8.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_058660.1 Smp_080650.1 0.92 6.08e-07 3.76e-05
Smp_068270.1 Smp_080650.1 0.91 1.62e-06 7.52e-05
Smp_080650.1 Smp_084270.1 0.92 1.03e-06 5.46e-05
Smp_123200.1 Smp_080650.1 0.91 1.48e-06 7.04e-05
Smp_080650.1 Smp_125210.1 0.91 1.24e-06 6.22e-05
Smp_134960.1 Smp_080650.1 0.91 2.09e-06 8.99e-05
Smp_137320.1 Smp_080650.1 0.92 5.93e-07 3.70e-05
Smp_170280.1 Smp_080650.1 0.93 2.27e-07 1.90e-05
Smp_200750.1 Smp_080650.1 0.93 2.20e-07 1.86e-05