Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_080280.3 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
Smp_080280.3 0 1.33 -8.93 3.12 3.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_080280.3 SmLINC00376-IBu 0.64 9.10e-03 3.26e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
Smp_080280.3 0 1.33 -8.93 3.12 3.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_080280.3 SmLINC00369-IBu 0.81 2.00e-04 2.40e-03
Smp_080280.3 SmLINC00548-IBu 0.82 1.00e-04 2.10e-03
Smp_080280.3 SmLINC00633-IBu 0.86 3.70e-05 6.00e-04
Smp_080280.3 SmLINC01122-IBu 0.87 1.86e-05 4.00e-04
Smp_080280.3 SmLINC01139-IBu 0.84 8.52e-05 1.20e-03
Smp_080280.3 SmLINC01316-IBu -0.81 2.00e-04 2.40e-03
Smp_080280.3 SmLINC01431-IBu 0.83 9.12e-05 1.30e-03
Smp_080280.3 SmLINC01538-IBu 0.85 4.20e-05 7.00e-04
Smp_080280.3 SmLINC01569-IBu 0.86 2.49e-05 5.00e-04
Smp_080280.3 SmLINC01733-IBu 0.85 4.50e-05 7.00e-04
Smp_080280.3 SmLINC01746-IBu 0.81 2.00e-04 2.30e-03
Smp_080280.3 SmLINC03309-IBu 0.83 1.00e-04 1.60e-03
Smp_080280.3 SmLINC04478-IBu 0.90 4.61e-06 1.00e-04
Smp_080280.3 SmLINC04521-IBu 0.86 2.98e-05 5.00e-04
Smp_080280.3 SmLINC04663-IBu 0.80 2.00e-04 2.80e-03
Smp_080280.3 SmLINC06145-IBu 0.81 1.00e-04 2.20e-03
Smp_080280.3 SmLINC06444-IBu 0.81 2.00e-04 2.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_080280.3 0 1.33 -8.93 3.12 3.23
Smp_159070.2 0 -0.62 -11.03 1.85 1.97

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_159070.2 Smp_080280.3 0.9 3.99e-06 1.00e-04