Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_079970.1 Data

Correlation between Smp_079970.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_079970.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_079970.1 SmLINC02678-IBu 0.81 2.00e-04 2.60e-03
Smp_079970.1 SmLINC04957-IBu 0.93 3.19e-07 2.30e-05
Smp_079970.1 SmLINC05989-IBu 0.86 2.49e-05 5.00e-04
Smp_079970.1 SmLINC06128-IBu 0.88 1.00e-05 2.00e-04
Smp_079970.1 SmLINC06890-IBu 0.94 1.15e-07 1.13e-05
Smp_079970.1 SmLINC06903-IBu 0.92 7.32e-07 4.11e-05

Correlation between Smp_079970.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_002510.1 0 -3.00 -2.99 -4.71 -4.29
Smp_005880.1 0 -1.71 -5.17 -4.43 -5.19
Smp_009650.1 0 -2.22 -4.12 -4.36 -3.86
Smp_010000.1 0 -1.51 -3.27 -4.59 -5.75
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_016730.1 0 -3.42 -4.55 -5.13 -5.31
Smp_019750.2 0 -2.70 -5.17 -4.10 -4.19
Smp_020550.1 0 -3.71 -4.02 -4.24 -5.10
Smp_021730.1 0 -2.52 -3.78 -4.00 -3.90
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_033400.1 0 -2.69 -7.71 -5.07 -4.27
Smp_034550.1 0 -2.91 -5.29 -2.60 -4.93
Smp_035270.2 0 -2.51 -3.90 -3.56 -3.15
Smp_036250.1 0 -3.24 -3.82 -4.15 -3.72
Smp_038100.1 0 -2.11 -3.55 -4.08 -3.42
Smp_038530.1 0 -2.20 -4.62 -4.98 -6.68
Smp_050830.1 0 -1.69 -2.62 -4.49 -4.19
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_061940.2 0 -3.16 -5.22 -11.34 -15.89
Smp_062720.2 0 -4.51 -3.77 -3.48 -4.71
Smp_063090.1 0 -2.16 -4.16 -3.57 -3.93
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_071390.1 0 -3.12 -4.67 -2.84 -3.82
Smp_076010.1 0 -2.03 -5.17 -3.81 -3.82
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_079920.1 0 -2.43 -3.90 -3.20 -3.57
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_083720.1 0 -2.37 -5.50 -6.31 -5.77
Smp_087250.1 0 -2.06 -5.90 -3.94 -5.02
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_097490.1 0 -3.10 -5.15 -2.72 -1.99
Smp_099670.1 0 -3.51 -4.19 -5.26 -6.78
Smp_099680.1 0 -3.17 -4.14 -4.93 -7.18
Smp_112480.1 0 -3.87 -4.82 -3.33 -2.83
Smp_114910.1 0 -3.08 -7.52 -7.91 -7.70
Smp_124340.1 0 -2.62 -4.99 -7.42 -3.75
Smp_129610.1 0 -3.45 -4.74 -3.50 -3.64
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_136240.9 0 -3.09 -3.16 -4.37 -6.52
Smp_137520.1 0 -2.84 -5.66 -3.12 -4.79
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_152260.1 0 -3.17 -4.39 -4.03 -4.71
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153600.1 0 -2.66 -5.24 -5.88 -4.89
Smp_154370.1 0 -2.82 -7.17 -3.52 -2.90
Smp_155890.1 0 -3.01 -4.45 -2.70 -3.71
Smp_174560.1 0 -1.74 -2.28 -5.34 -5.48
Smp_175190.1 0 -3.40 -5.32 -6.00 -5.17
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_194770.1 0 -2.35 -7.85 -7.77 -7.92
Smp_196050.1 0 -3.12 -5.35 -6.02 -6.99
Smp_204770.1 0 -2.64 -6.46 -5.44 -5.13
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_214150.1 0 -3.99 -7.32 -3.18 -5.90

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_079970.1 SmLINC04957-IBu 0.93 3.19e-07 2.41e-05
Smp_079970.1 SmLINC06890-IBu 0.94 1.15e-07 1.19e-05
Smp_079970.1 SmLINC06903-IBu 0.92 7.32e-07 4.28e-05
Smp_079970.1 Smp_002510.1 0.97 2.11e-10 1.88e-07
Smp_079970.1 Smp_005880.1 0.95 3.50e-08 5.30e-06
Smp_079970.1 Smp_009650.1 0.98 1.30e-10 1.37e-07
Smp_010000.1 Smp_079970.1 0.92 9.86e-07 5.28e-05
Smp_014400.5 Smp_079970.1 0.90 3.12e-06 1.00e-04
Smp_079970.1 Smp_016730.1 0.98 1.44e-10 1.47e-07
Smp_079970.1 Smp_019750.2 0.91 1.81e-06 8.12e-05
Smp_079970.1 Smp_020550.1 0.96 1.21e-08 2.60e-06
Smp_079970.1 Smp_021730.1 0.91 1.28e-06 6.35e-05
Smp_030500.1 Smp_079970.1 0.97 1.14e-09 5.56e-07
Smp_032980.1 Smp_079970.1 0.95 1.66e-08 3.21e-06
Smp_033400.1 Smp_079970.1 0.93 3.47e-07 2.55e-05
Smp_034550.1 Smp_079970.1 0.93 2.98e-07 2.29e-05
Smp_035270.2 Smp_079970.1 0.92 5.46e-07 3.49e-05
Smp_036250.1 Smp_079970.1 0.97 1.74e-09 7.26e-07
Smp_079970.1 Smp_038100.1 0.97 3.84e-10 2.76e-07
Smp_079970.1 Smp_038530.1 0.96 1.35e-08 2.80e-06
Smp_079970.1 Smp_050830.1 0.92 9.36e-07 5.09e-05
Smp_079970.1 Smp_052060.1 0.90 4.46e-06 1.00e-04
Smp_055770.1 Smp_079970.1 0.99 8.62e-13 6.05e-09
Smp_079970.1 Smp_057790.1 0.93 4.06e-07 2.84e-05
Smp_061870.1 Smp_079970.1 0.90 4.78e-06 1.00e-04
Smp_079970.1 Smp_061940.2 0.91 1.80e-06 8.08e-05
Smp_079970.1 Smp_062720.2 0.90 4.01e-06 1.00e-04
Smp_063090.1 Smp_079970.1 0.97 3.35e-10 2.53e-07
Smp_079970.1 Smp_071380.2 0.93 4.97e-07 3.27e-05
Smp_079970.1 Smp_071390.1 0.97 8.92e-10 4.74e-07
Smp_076010.1 Smp_079970.1 0.96 3.58e-09 1.16e-06
Smp_079970.1 Smp_079220.1 0.96 8.07e-09 1.98e-06
Smp_079970.1 Smp_079920.1 0.98 4.57e-12 1.70e-08
Smp_083720.1 Smp_079970.1 0.97 7.14e-10 4.10e-07
Smp_087250.1 Smp_079970.1 0.94 8.31e-08 9.53e-06
Smp_092320.1 Smp_079970.1 0.94 1.38e-07 1.35e-05
Smp_097490.1 Smp_079970.1 0.90 3.15e-06 1.00e-04
Smp_079970.1 Smp_099670.1 0.97 2.13e-09 8.29e-07
Smp_079970.1 Smp_099680.1 0.96 8.04e-09 1.97e-06
Smp_112480.1 Smp_079970.1 0.95 3.34e-08 5.14e-06
Smp_079970.1 Smp_114910.1 0.92 1.03e-06 5.47e-05
Smp_124340.1 Smp_079970.1 0.95 4.46e-08 6.25e-06
Smp_129610.1 Smp_079970.1 0.98 2.15e-11 4.43e-08
Smp_134410.1 Smp_079970.1 0.92 5.64e-07 3.57e-05
Smp_136240.9 Smp_079970.1 0.91 2.32e-06 9.68e-05
Smp_079970.1 Smp_137520.1 0.95 2.04e-08 3.69e-06
Smp_140270.1 Smp_079970.1 0.94 1.85e-07 1.65e-05
Smp_152260.1 Smp_079970.1 0.94 8.28e-08 9.51e-06
Smp_079970.1 Smp_152780.1 0.99 4.40e-14 9.87e-10
Smp_079970.1 Smp_153600.1 0.99 2.12e-14 6.25e-10
Smp_154370.1 Smp_079970.1 0.93 4.88e-07 3.23e-05
Smp_155890.1 Smp_079970.1 0.94 1.31e-07 1.30e-05
Smp_079970.1 Smp_174560.1 0.91 1.33e-06 6.52e-05
Smp_175190.1 Smp_079970.1 0.93 4.05e-07 2.84e-05
Smp_079970.1 Smp_184750.1 0.91 2.42e-06 9.95e-05
Smp_079970.1 Smp_194770.1 0.98 1.26e-10 1.34e-07
Smp_079970.1 Smp_196050.1 0.98 2.97e-11 5.45e-08
Smp_079970.1 Smp_204770.1 0.99 2.53e-13 2.85e-09
Smp_206200.1 Smp_079970.1 0.93 3.43e-07 2.53e-05
Smp_079970.1 Smp_214150.1 0.91 2.07e-06 8.92e-05