Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_079920.1 Data

Correlation between Smp_079920.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC04957-IBu 0 -2.62 -5.9 -3.92 -7.44
Smp_079920.1 0 -2.43 -3.9 -3.20 -3.57

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_079920.1 SmLINC04957-IBu 0.93 2.56e-07 1.35e-05

Correlation between Smp_079920.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_079920.1 0 -2.43 -3.90 -3.20 -3.57

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_079920.1 SmLINC02678-IBu 0.84 8.32e-05 1.20e-03
Smp_079920.1 SmLINC04957-IBu 0.93 2.56e-07 1.97e-05
Smp_079920.1 SmLINC05989-IBu 0.89 6.49e-06 1.00e-04
Smp_079920.1 SmLINC06128-IBu 0.92 8.32e-07 4.50e-05
Smp_079920.1 SmLINC06890-IBu 0.92 9.92e-07 5.10e-05
Smp_079920.1 SmLINC06903-IBu 0.91 1.41e-06 6.55e-05

Correlation between Smp_079920.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_079920.1 0 -2.43 -3.90 -3.20 -3.57
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_079920.1 Smp_018880.1 0.93 4.66e-07 3.13e-05
Smp_032980.1 Smp_079920.1 0.95 2.67e-08 4.41e-06
Smp_055770.1 Smp_079920.1 0.97 6.32e-10 3.79e-07
Smp_079920.1 Smp_071380.2 0.94 1.28e-07 1.28e-05
Smp_079970.1 Smp_079920.1 0.98 4.57e-12 1.70e-08
Smp_102670.1 Smp_079920.1 0.90 2.74e-06 1.00e-04
Smp_134410.1 Smp_079920.1 0.95 1.49e-08 2.98e-06
Smp_079920.1 Smp_152780.1 0.98 3.01e-12 1.31e-08
Smp_079920.1 Smp_169190.1 0.91 1.93e-06 8.48e-05
Smp_206200.1 Smp_079920.1 0.92 5.50e-07 3.51e-05