Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_078310.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
Smp_078310.2 0 0.40 -0.51 -3.28 -9.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_078310.2 SmLINC00026-IBu 0.83 9.28e-05 1.30e-03
Smp_078310.2 SmLINC00294-IBu 0.80 2.00e-04 3.10e-03
Smp_078310.2 SmLINC01462-IBu 0.81 1.00e-04 2.30e-03
Smp_078310.2 SmLINC04129-IBu 0.81 2.00e-04 2.50e-03
Smp_078310.2 SmLINC04271-IBu 0.85 5.75e-05 9.00e-04
Smp_078310.2 SmLINC06489-IBu 0.82 1.00e-04 2.10e-03